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    myb-like HTH transcriptional regulator family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 814630, updated on 18-Sep-2024

    Summary

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    Official Full Name
    myb-like HTH transcriptional regulator family protein
    Primary source
    TAIR:AT2G01060
    Locus tag
    AT2G01060
    See related
    Araport:AT2G01060
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F23H14.3; F23H14_3
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    7
    Sequence:
    Chromosome: 2; NC_003071.7 (73208..75509, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene zinc ion binding / nucleic acid binding protein Neighboring gene ncRNA Neighboring gene Lung seven transmembrane receptor family protein Neighboring gene Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
    2. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_126168.5
    NM_201656.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of DNA-templated transcription TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    myb-like HTH transcriptional regulator family protein
    NP_178216.1
    • myb-like HTH transcriptional regulator family protein; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G04450.1); Has 1678 Blast hits to 1660 proteins in 60 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 1660; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
    NP_973385.1
    • myb-like HTH transcriptional regulator family protein; BEST Arabidopsis thaliana protein match is: myb-like HTH transcriptional regulator family protein (TAIR:AT3G13040.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      73208..75509 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_126168.5 → NP_178216.1  myb-like HTH transcriptional regulator family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_178216.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4IM72, Q9SJW0
      UniProtKB/TrEMBL
      A0A178VZU9, A0A5S9WW75, A0A7G2EAI5
      Conserved Domains (2) summary
      TIGR01557
      Location:15 → 71
      myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
      pfam14379
      Location:102 → 147
      Myb_CC_LHEQLE; MYB-CC type transfactor, LHEQLE motif

    2. NM_201656.2 → NP_973385.1  myb-like HTH transcriptional regulator family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973385.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2EAI5
      Conserved Domains (2) summary
      pfam14379
      Location:52 → 97
      Myb_CC_LHEQLE; MYB-CC type transfactor, LHEQLE motif
      cl21498
      Location:1 → 22
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SJW0.1

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