P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain-containing protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Full Name: P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain-containing protein
Primary source: TAIR:AT1G63640
Locus tag: AT1G63640
See related: Araport:AT1G63640
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: F2K11.1; F2K11_1
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Genomic context

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See in Genome Data Viewer

Location:: chromosome: 1

Exon count:: 21

Sequence:: Chromosome: 1; NC_003070.9 (23588936..23595925, complement)

Chromosome 1 - NC_003070.9 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

interaction of KinG with SHR allows for the formation of stable movement complexes that facilitate the cell-to-cell transport of SHR.[KinG]
Title: KinG Is a Plant-Specific Kinesin That Regulates Both Intra- and Intercellular Movement of SHORT-ROOT.

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General gene information

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NM_001334115.1

Supported by ESTs:

NM_001334116.1

Supported by ESTs:

NM_001334117.1

Supported by ESTs:

NM_105041.4

Supported by ESTs:

NM_202350.1

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables microtubule binding	IEA Inferred from Electronic Annotation more info
enables microtubule motor activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in microtubule-based movement	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in nucleus	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain-containing protein

NP_176551.3

P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Calponin-homology (InterPro:IPR016146), Calponin-like actin-binding (InterPro:IPR001715), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (TAIR:AT5G41310.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NP_974079.1

P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Calponin-homology (InterPro:IPR016146), Calponin-like actin-binding (InterPro:IPR001715), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (TAIR:AT5G41310.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003070.9 Reference assembly

Range

23588936..23595925 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_105041.4 → NP_176551.3 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain-containing protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_176551.3

Status: REVIEWED

UniProtKB/Swiss-Prot

B3H6Z8, E1ACC4, Q9CAC9, Q9SH47

UniProtKB/TrEMBL

A0A178WJ72

Conserved Domains (4) summary

COG1579
Location:293 → 472

COG1579; Predicted nucleic acid-binding protein, contains Zn-ribbon domain [General function prediction only]

pfam10174
Location:185 → 382

Cast; RIM-binding protein of the cytomatrix active zone

cl00030
Location:41 → 139

CH_SF; calponin homology (CH) domain superfamily

cl22853
Location:470 → 802

Motor_domain; Myosin and Kinesin motor domain
NM_001334115.1 → NP_001322192.1 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain-containing protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A178WJ72, A0A1P8AT87
NM_001334116.1 → NP_001322194.1 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain-containing protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/Swiss-Prot

B3H6Z8, E1ACC4, Q9CAC9, Q9SH47

UniProtKB/TrEMBL

A0A178WJ72

Conserved Domains (4) summary

COG1579
Location:293 → 472

COG1579; Predicted nucleic acid-binding protein, contains Zn-ribbon domain [General function prediction only]

pfam10174
Location:185 → 382

Cast; RIM-binding protein of the cytomatrix active zone

cl00030
Location:41 → 139

CH_SF; calponin homology (CH) domain superfamily

cl22853
Location:470 → 802

Motor_domain; Myosin and Kinesin motor domain
NM_001334117.1 → NP_001322193.1 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain-containing protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A178WJ72, A0A1P8ATA6
NM_202350.1 → NP_974079.1 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain-containing protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_974079.1

Status: REVIEWED

UniProtKB/TrEMBL

A0A5S9WRT9, F4I3N9

Conserved Domains (4) summary

smart00129
Location:472 → 799

KISc; Kinesin motor, catalytic domain. ATPase

cl22853
Location:470 → 795

Motor_domain; Myosin and Kinesin motor domain

pfam00307
Location:43 → 137

CH; Calponin homology (CH) domain

cl23720
Location:272 → 391

RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)