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    CAT9 cationic amino acid transporter 9 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837104, updated on 18-Sep-2024

    Summary

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    Official Symbol
    CAT9
    Official Full Name
    cationic amino acid transporter 9
    Primary source
    TAIR:AT1G05940
    Locus tag
    AT1G05940
    See related
    Araport:AT1G05940
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    cationic amino acid transporter 9; T21E18.1; T21E18_1
    Summary
    Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters.
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    Genomic context

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    See CAT9 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    7
    Sequence:
    Chromosome: 1; NC_003070.9 (1801110..1804000, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene B3 domain protein (DUF313) Neighboring gene B3 domain protein (DUF313) Neighboring gene uncharacterized protein Neighboring gene ARM repeat superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Uncovering Arabidopsis membrane protein interactome enriched in transporters using mating-based split ubiquitin assays and classification models. Chen J, et al. Front Plant Sci, 2012. PMID 22737156, Free PMC Article
    2. A proteomics dissection of Arabidopsis thaliana vacuoles isolated from cell culture. Jaquinod M, et al. Mol Cell Proteomics, 2007 Mar. PMID 17151019, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001331601.1
    NM_001331602.1
    NM_001331603.1
    NM_100475.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables basic amino acid transmembrane transporter activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plant-type vacuole HDA PubMed 

    General protein information

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    Preferred Names
    cationic amino acid transporter 9
    NP_563754.1
    • cationic amino acid transporter 9 (CAT9); FUNCTIONS IN: cationic amino acid transmembrane transporter activity; INVOLVED IN: amino acid transport, transport, transmembrane transport; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cationic amino acid transporter (InterPro:IPR015606), Amino acid/polyamine transporter I (InterPro:IPR002293), Amino acid permease domain (InterPro:IPR004841); BEST Arabidopsis thaliana protein match is: cationic amino acid transporter 4 (TAIR:AT3G03720.1); Has 34191 Blast hits to 33870 proteins in 2358 species: Archae - 527; Bacteria - 27519; Metazoa - 1917; Fungi - 2586; Plants - 410; Viruses - 0; Other Eukaryotes - 1232 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      1801110..1804000 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100475.4 → NP_563754.1  cationic amino acid transporter 9 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_563754.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9C5D6, Q9LNF0
      UniProtKB/TrEMBL
      A0A178WG13, A0A5S9SVG7, A0A654E7G3
      Conserved Domains (1) summary
      TIGR00906
      Location:42 → 552
      2A0303; cationic amino acid transport permease

    2. NM_001331601.1 → NP_001322444.1  cationic amino acid transporter 9 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AU13

    3. NM_001331602.1 → NP_001322445.1  cationic amino acid transporter 9 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AU02, A0A5S9SVG7, A0A654E7G3
      Conserved Domains (1) summary
      TIGR00906
      Location:42 → 528
      2A0303; cationic amino acid transport permease

    4. NM_001331603.1 → NP_001322446.1  cationic amino acid transporter 9 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AU30, A0A5S9SVG7, A0A654E7G3
      Conserved Domains (1) summary
      TIGR00906
      Location:42 → 445
      2A0303; cationic amino acid transport permease
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9C5D6.1

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