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    XXT5 xyloglucan xylosyltransferase 5 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843779, updated on 18-Sep-2024

    Summary

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    Official Symbol
    XXT5
    Official Full Name
    xyloglucan xylosyltransferase 5
    Primary source
    TAIR:AT1G74380
    Locus tag
    AT1G74380
    See related
    Araport:AT1G74380
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F1M20.6; F1M20_6; xyloglucan xylosyltransferase 5
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    Genomic context

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    See XXT5 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    1
    Sequence:
    Chromosome: 1; NC_003070.9 (27959527..27961487)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Leucine-rich repeat protein kinase family protein Neighboring gene ncRNA Neighboring gene RING/U-box superfamily protein Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene Polynucleotidyl transferase, ribonuclease H-like superfamily protein Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene RING/U-box superfamily protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Enzymatic Activity of Xyloglucan Xylosyltransferase 5. Culbertson AT, et al. Plant Physiol, 2016 Jul. PMID 27208276, Free PMC Article
    2. Arabidopsis XXT5 gene encodes a putative alpha-1,6-xylosyltransferase that is involved in xyloglucan biosynthesis. Zabotina OA, et al. Plant J, 2008 Oct. PMID 18557833
    3. Mutations in multiple XXT genes of Arabidopsis reveal the complexity of xyloglucan biosynthesis. Zabotina OA, et al. Plant Physiol, 2012 Aug. PMID 22696020, Free PMC Article
    4. Galactose-depleted xyloglucan is dysfunctional and leads to dwarfism in Arabidopsis. Kong Y, et al. Plant Physiol, 2015 Apr. PMID 25673778, Free PMC Article
    5. Arabidopsis GT34 family contains five xyloglucan α-1,6-xylosyltransferases. Vuttipongchaikij S, et al. New Phytol, 2012 Aug. PMID 22670626

    See all (13) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. XXT5 transfers a d-xylosyl residue from UDP-Xyl onto cellohexaose.
      Title: Enzymatic Activity of Xyloglucan Xylosyltransferase 5.
    2. The supramolecular organization of the CSLC4, XXT1, XXT2, and XXT5 proteins in Arabidopsis protoplasts, was investigated.
      Title: Xyloglucan xylosyltransferases XXT1, XXT2, and XXT5 and the glucan synthase CSLC4 form Golgi-localized multiprotein complexes.
    3. XXT1 and XXT2 are responsible for the bulk of the xylosylation of the glucan backbone, and at least one of these proteins must be present and active for xyloglucan to be made. XXT5 plays a significant but as yet uncharacterized role in this process.
      Title: Mutations in multiple XXT genes of Arabidopsis reveal the complexity of xyloglucan biosynthesis.
    4. XXT5 is a xyloglucan alpha-1,6-xylosyltransferase that probably acts together with XXT1 and XXT2, and functions in the biosynthesis of xyloglucan.
      Title: Arabidopsis XXT5 gene encodes a putative alpha-1,6-xylosyltransferase that is involved in xyloglucan biosynthesis.
    Submit: New GeneRIF Correction

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_106098.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables glycosyltransferase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables xyloglucan 6-xylosyltransferase activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within root hair elongation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within xyloglucan metabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus HDA PubMed 
    located_in Golgi apparatus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in Golgi membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in Golgi trans cisterna HDA PubMed 
    located_in Golgi trans cisterna IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in endosome HDA PubMed 
    located_in trans-Golgi network HDA PubMed 

    General protein information

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    Preferred Names
    xyloglucan xylosyltransferase 5
    NP_177578.1
    • xyloglucan xylosyltransferase 5 (XXT5); FUNCTIONS IN: xyloglucan 6-xylosyltransferase activity, transferase activity, transferring glycosyl groups, transferase activity; INVOLVED IN: N-terminal protein myristoylation, root hair elongation; LOCATED IN: Golgi apparatus, Golgi membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Galactosyl transferase (InterPro:IPR008630); BEST Arabidopsis thaliana protein match is: Galactosyl transferase GMA12/MNN10 family protein (TAIR:AT5G07720.1); Has 459 Blast hits to 457 proteins in 98 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 150; Plants - 280; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      27959527..27961487
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_106098.4 → NP_177578.1  xyloglucan xylosyltransferase 5 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_177578.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9CA75, W8PVU0
      UniProtKB/TrEMBL
      A0A178W9Y3, A0A5S9WUB1
      Conserved Domains (1) summary
      PLN03182
      Location:42 → 452
      PLN03182; xyloglucan 6-xylosyltransferase; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9CA75.1

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