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    LBD5 LOB domain-containing protein 5 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 840503, updated on 18-Sep-2024

    Summary

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    Official Symbol
    LBD5
    Official Full Name
    LOB domain-containing protein 5
    Primary source
    TAIR:AT1G36000
    Locus tag
    AT1G36000
    See related
    Araport:AT1G36000
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    LOB domain-containing protein 5; T22A15.8; T22A15_8
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    Genomic context

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    See LBD5 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (13422554..13423028)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene pseudo Neighboring gene pseudo Neighboring gene receptor-like kinase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. ZmMS1/ZmLBD30-orchestrated transcriptional regulatory networks precisely control pollen exine development. Hou Q, et al. Mol Plant, 2023 Aug 7. PMID 37501369
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription activator activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    LOB domain-containing protein 5
    NP_174832.1
    • LOB domain-containing protein 5 (LBD5); CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LOB domain-containing protein 8 (TAIR:AT2G19510.1); Has 767 Blast hits to 763 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 767; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      13422554..13423028
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_103296.4 → NP_174832.1  LOB domain-containing protein 5 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_174832.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B7XG87, Q4PT06, Q9C8V8
      UniProtKB/TrEMBL
      A0A178WK74, A0A654EFH5
      Conserved Domains (1) summary
      pfam03195
      Location:10 → 102
      LOB; Lateral organ boundaries (LOB) domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9C8V8.1

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