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    CELLULOSE SYNTHASE INTERACTIVE 3 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 844082, updated on 18-Sep-2024

    Summary

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    Official Full Name
    CELLULOSE SYNTHASE INTERACTIVE 3
    Primary source
    TAIR:AT1G77460
    Locus tag
    AT1G77460
    See related
    Araport:AT1G77460
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    CELLULOSE SYNTHASE INTERACTIVE 3; CSI3; T5M16.5; T5M16_5
    Summary
    Encodes a plasma membrane, microtubule associated protein with sequence similarity to CSI1 that is involved in cellulose biosynthesis and cell elongation. A mutation in CSI3 alone do not appear to affect growth but enhances the cell elongation phenotype of CSI1 mutants. CSI3 co localizes with CSI1 and CESA3 and CESA6.
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    7
    Sequence:
    Chromosome: 1; NC_003070.9 (29103608..29111956)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene NAC domain containing protein 32 Neighboring gene replication factor C subunit 3 Neighboring gene Eukaryotic aspartyl protease family protein Neighboring gene thylakoidal ascorbate peroxidase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Cellulose synthase INTERACTIVE3 regulates cellulose biosynthesis in both a microtubule-dependent and microtubule-independent manner in Arabidopsis. Lei L, et al. Plant Cell, 2013 Dec. PMID 24368796, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. CSI3 is an important regulator of plant cellulose biosynthesis and plant anisotropic cell growth that modulates the velocity of CSCs in both a microtubule-dependent and microtubule-independent manner. [CSI3]
      Title: Cellulose synthase INTERACTIVE3 regulates cellulose biosynthesis in both a microtubule-dependent and microtubule-independent manner in Arabidopsis.
    Submit: New GeneRIF Correction

    General gene information

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    NM_001198490.2
    NM_001334782.1
    NM_001334783.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables microtubule binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in anisotropic cell growth IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within plant-type cell wall cellulose biosynthetic process IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in protein localization to cortical microtubule cytoskeleton IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in regulation of cellulose biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within unidimensional cell growth IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cellulose synthase complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cortical microtubule IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    CELLULOSE SYNTHASE INTERACTIVE 3
    NP_001185419.1
    • Armadillo/beta-catenin-like repeat; C2 calcium/lipid-binding domain (CaLB) protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), Armadillo-like helical (InterPro:IPR011989), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Armadillo/beta-catenin-like repeat; C2 calcium/lipid-binding domain (CaLB) protein (TAIR:AT1G44120.1).
    NP_001319395.1
    • Armadillo/beta-catenin-like repeat; C2 calcium/lipid-binding domain (CaLB) protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), C2 membrane targeting protein (InterPro:IPR018029), Armadillo (InterPro:IPR000225), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Armadillo-type fold (InterPro:IPR016024), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Armadillo/beta-catenin-like repeat; C2 calcium/lipid-binding domain (CaLB) protein (TAIR:AT1G44120.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      29103608..29111956
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_106395.4 → NP_177870.2  CELLULOSE SYNTHASE INTERACTIVE 3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_177870.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4I718, Q8GXS1, Q9CAQ9
      UniProtKB/TrEMBL
      A0A5S9WV56
      Conserved Domains (3) summary
      PLN03200
      Location:25 → 2130
      PLN03200; cellulose synthase-interactive protein; Provisional
      sd00044
      Location:125 → 149
      HEAT; HEAT repeat [structural motif]
      sd00043
      Location:473 → 498
      ARM; armadillo repeat [structural motif]

    2. NM_001198490.2 → NP_001185419.1  CELLULOSE SYNTHASE INTERACTIVE 3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001185419.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4I718, Q8GXS1, Q9CAQ9
      UniProtKB/TrEMBL
      A0A5S9WV56
      Conserved Domains (3) summary
      PLN03200
      Location:25 → 2130
      PLN03200; cellulose synthase-interactive protein; Provisional
      sd00044
      Location:125 → 149
      HEAT; HEAT repeat [structural motif]
      sd00043
      Location:473 → 498
      ARM; armadillo repeat [structural motif]

    3. NM_001334783.1 → NP_001322685.1  CELLULOSE SYNTHASE INTERACTIVE 3 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4I718, Q8GXS1, Q9CAQ9
      UniProtKB/TrEMBL
      A0A5S9WV56
      Conserved Domains (3) summary
      PLN03200
      Location:25 → 2130
      PLN03200; cellulose synthase-interactive protein; Provisional
      sd00044
      Location:125 → 149
      HEAT; HEAT repeat [structural motif]
      sd00043
      Location:473 → 498
      ARM; armadillo repeat [structural motif]

    4. NM_001334782.1 → NP_001319395.1  CELLULOSE SYNTHASE INTERACTIVE 3 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4I718, Q8GXS1, Q9CAQ9
      UniProtKB/TrEMBL
      A0A5S9WV56
      Conserved Domains (3) summary
      PLN03200
      Location:25 → 2130
      PLN03200; cellulose synthase-interactive protein; Provisional
      sd00044
      Location:125 → 149
      HEAT; HEAT repeat [structural motif]
      sd00043
      Location:473 → 498
      ARM; armadillo repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4I718.1

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