U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    uncharacterized protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821515, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    uncharacterized protein
    Primary source
    TAIR:AT3G19780
    Locus tag
    AT3G19780
    See related
    Araport:AT3G19780
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MMB12.5
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 3
    Exon count:
    7
    Sequence:
    Chromosome: 3; NC_003074.8 (6870130..6874850)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene eukaryotic initiation factor 4A-III Neighboring gene Vacuolar sorting protein 9 (VPS9) domain-containing protein Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene E3 ubiquitin-protein ligase, putative (DUF177) Neighboring gene BTB/POZ domain protein, putative (DUF177) Neighboring gene cell elongation protein / DWARF1 / DIMINUTO (DIM)

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help
    NM_112868.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    uncharacterized protein
    NP_001189936.1
    • LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF179 (InterPro:IPR003774), Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF179) (TAIR:AT1G33780.1).
    NP_566646.5
    • LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF179 (InterPro:IPR003774), Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF179) (TAIR:AT1G33780.1); Has 74 Blast hits to 72 proteins in 32 species: Archae - 0; Bacteria - 24; Metazoa - 11; Fungi - 3; Plants - 32; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      6870130..6874850
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001203007.2 → NP_001189936.1  uncharacterized protein AT3G19780 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189936.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V7I2, F4JCD4
      Conserved Domains (2) summary
      cl00388
      Location:705 → 818
      Thioredoxin_like; Protein Disulfide Oxidoreductases and Other Proteins with a Thioredoxin fold
      cl00731
      Location:897 → 1053
      DUF179; Uncharacterized ACR, COG1678

    2. NM_001338417.1 → NP_001325968.1  uncharacterized protein AT3G19780 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LMU9, Q9LT30

    3. NM_001338418.1 → NP_001325967.1  uncharacterized protein AT3G19780 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LMU8, Q9LT30
      Conserved Domains (2) summary
      TIGR01130
      Location:412 → 631
      ER_PDI_fam; protein disulfide isomerase, eukaryotic
      cl00731
      Location:706 → 862
      DUF179; Uncharacterized ACR, COG1678

    4. NM_112868.6 → NP_566646.5  uncharacterized protein AT3G19780 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566646.5

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V7M5, F4JCD3
      Conserved Domains (2) summary
      cl00388
      Location:705 → 819
      Thioredoxin_like; Protein Disulfide Oxidoreductases and Other Proteins with a Thioredoxin fold
      cl00731
      Location:898 → 1054
      DUF179; Uncharacterized ACR, COG1678
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.