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    Transmembrane proteins 14C [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821597, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Transmembrane proteins 14C
    Primary source
    TAIR:AT3G20510
    Locus tag
    AT3G20510
    See related
    Araport:AT3G20510
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    3
    Sequence:
    Chromosome: 3; NC_003074.8 (7160677..7162395)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Rho GTPase-activating protein Neighboring gene purple acid phosphatase 18 Neighboring gene SHV3-like 3 Neighboring gene Protein kinase superfamily protein Neighboring gene polymerase gamma 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. FAX1, a novel membrane protein mediating plastid fatty acid export. Li N, et al. PLoS Biol, 2015 Feb. PMID 25646734, Free PMC Article
    2. High-throughput protein localization in Arabidopsis using Agrobacterium-mediated transient expression of GFP-ORF fusions. Koroleva OA, et al. Plant J, 2005 Jan. PMID 15610358
    3. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    4. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    5. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_112943.5

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in cytoplasm HDA PubMed 
    located_in endomembrane system TAS
    Traceable Author Statement
    more info
    		 PubMed 
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus HDA PubMed 

    General protein information

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    Preferred Names
    Transmembrane proteins 14C
    NP_188687.1
    • Transmembrane proteins 14C; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0136, Transmembrane (InterPro:IPR005349); BEST Arabidopsis thaliana protein match is: Transmembrane proteins 14C (TAIR:AT1G50740.1); Has 449 Blast hits to 449 proteins in 111 species: Archae - 0; Bacteria - 35; Metazoa - 208; Fungi - 10; Plants - 185; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      7160677..7162395
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112943.5 → NP_188687.1  Transmembrane proteins 14C [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_188687.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LJU6
      UniProtKB/TrEMBL
      A0A178VHB3, A0A5S9XDZ7, A0A654FHK0
      Conserved Domains (1) summary
      pfam03647
      Location:5 → 101
      Tmemb_14; Transmembrane proteins 14C
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LJU6.1

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