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    Nascent polypeptide-associated complex (NAC), alpha subunit family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 826640, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Nascent polypeptide-associated complex (NAC), alpha subunit family protein
    Primary source
    TAIR:AT4G10480
    Locus tag
    AT4G10480
    See related
    Araport:AT4G10480
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F7L13.60; F7L13_60
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    4
    Sequence:
    Chromosome: 4; NC_003075.7 (6477876..6479171, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene Heavy metal transport/detoxification superfamily protein Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Interactomics of Qa-SNARE in Arabidopsis thaliana. Fujiwara M, et al. Plant Cell Physiol, 2014 Apr. PMID 24556609
    2. Proteomic analysis of the 26S proteasome reveals its direct interaction with transit peptides of plastid protein precursors for their degradation. Sako K, et al. J Proteome Res, 2014 Jul 3. PMID 24846764
    3. Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. Kim TW, et al. Plant Cell, 2023 Mar 15. PMID 36660928, Free PMC Article
    4. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article
    5. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001084900.1
    NM_117116.4

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in cytosol HDA PubMed 
    part_of nascent polypeptide-associated complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Nascent polypeptide-associated complex (NAC), alpha subunit family protein
    NP_001078369.1
    • Nascent polypeptide-associated complex (NAC), alpha subunit family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Nascent polypeptide-associated complex, alpha subunit (InterPro:IPR016641), Nascent polypeptide-associated complex NAC (InterPro:IPR002715); BEST Arabidopsis thaliana protein match is: nascent polypeptide-associated complex subunit alpha-like protein 5 (TAIR:AT1G33040.1); Has 1084 Blast hits to 1078 proteins in 302 species: Archae - 64; Bacteria - 9; Metazoa - 419; Fungi - 254; Plants - 153; Viruses - 7; Other Eukaryotes - 178 (source: NCBI BLink).
    NP_192786.1
    • Nascent polypeptide-associated complex (NAC), alpha subunit family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Nascent polypeptide-associated complex, alpha subunit (InterPro:IPR016641), Nascent polypeptide-associated complex NAC (InterPro:IPR002715); BEST Arabidopsis thaliana protein match is: nascent polypeptide-associated complex subunit alpha-like protein 5 (TAIR:AT1G33040.1); Has 1093 Blast hits to 1084 proteins in 303 species: Archae - 64; Bacteria - 9; Metazoa - 410; Fungi - 246; Plants - 158; Viruses - 2; Other Eukaryotes - 204 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      6477876..6479171 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_117116.4 → NP_192786.1  Nascent polypeptide-associated complex (NAC), alpha subunit family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_192786.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SZY1, Q9ZSA6
      UniProtKB/TrEMBL
      A0A178V0D1, A0A384KL47, Q0WWN5
      Conserved Domains (3) summary
      cd14358
      Location:175 → 211
      UBA_NAC_euk; UBA-like domain found in nascent polypeptide-associated complex subunit alpha (NACA) and its homologs mainly found in eukaryotes
      TIGR00264
      Location:138 → 210
      TIGR00264; alpha-NAC-related protein
      cd22054
      Location:79 → 126
      NAC_NACA; nascent polypeptide-associated complex (NAC), alpha subunit

    2. NM_001084900.1 → NP_001078369.1  Nascent polypeptide-associated complex (NAC), alpha subunit family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078369.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A8MQP6
      Conserved Domains (3) summary
      COG1308
      Location:68 → 210
      EGD2; Transcription factor homologous to NACalpha-BTF3 [Transcription]
      cd14358
      Location:174 → 210
      UBA_NAC_euk; UBA-like domain found in nascent polypeptide-associated complex subunit alpha (NACA) and its homologs mainly found in eukaryotes
      pfam01849
      Location:69 → 122
      NAC; NAC domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SZY1.1

    Gene LinkOut

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