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    CLE2 CLAVATA3/ESR-related 2 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827583, updated on 18-Sep-2024

    Summary

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    Official Symbol
    CLE2
    Official Full Name
    CLAVATA3/ESR-related 2
    Primary source
    TAIR:AT4G18510
    Locus tag
    AT4G18510
    See related
    Araport:AT4G18510
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    CLAVATA3/ESR-related 2; F28J12.170; F28J12_170
    Summary
    CLE2, putative ligand, member of large gene family homologous to Clavata3
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    Genomic context

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    See CLE2 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    1
    Sequence:
    Chromosome: 4; NC_003075.7 (10211577..10212452)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene lysine ketoglutarate reductase trans-splicing-like protein, putative (DUF707)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. CLE2 regulates light-dependent carbohydrate metabolism in Arabidopsis shoots. Ma D, et al. Plant Mol Biol, 2020 Dec. PMID 32980951
    2. A glycopeptide regulating stem cell fate in Arabidopsis thaliana. Ohyama K, et al. Nat Chem Biol, 2009 Aug. PMID 19525968
    3. A large family of genes that share homology with CLAVATA3. Cock JM, et al. Plant Physiol, 2001 Jul. PMID 11457943, Free PMC Article
    4. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    5. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. CLE2 regulates light-dependent carbohydrate metabolism in Arabidopsis shoots.
      Title: CLE2 regulates light-dependent carbohydrate metabolism in Arabidopsis shoots.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_117965.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables receptor serine/threonine kinase binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell fate commitment IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in cell-cell signaling IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in apoplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in apoplast ISM
    Inferred from Sequence Model
    more info
    		 PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    CLAVATA3/ESR-related 2
    NP_193586.1
    • CLAVATA3/ESR-related 2 (CLE2); Has 10 Blast hits to 10 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      10211577..10212452
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_117965.5 → NP_193586.1  CLAVATA3/ESR-related 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193586.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O49519
      UniProtKB/TrEMBL
      A0A178UVM8, A0A5S9XUI1
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O49519.1

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