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    Riboflavin synthase-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828612, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Riboflavin synthase-like superfamily protein
    Primary source
    TAIR:AT4G25090
    Locus tag
    AT4G25090
    See related
    Araport:AT4G25090
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F24A6.3
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    11
    Sequence:
    Chromosome: 4; NC_003075.7 (12878667..12883805, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene acyl carrier protein 4 Neighboring gene caldesmon-like protein Neighboring gene magnesium-protoporphyrin IX methyltransferase Neighboring gene Fe superoxide dismutase 1 Neighboring gene metacaspase 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Production of reactive oxygen species by plant NADPH oxidases. Sagi M, et al. Plant Physiol, 2006 Jun. PMID 16760484, Free PMC Article
    2. High heterogeneity within the ribosomal proteins of the Arabidopsis thaliana 80S ribosome. Giavalisco P, et al. Plant Mol Biol, 2005 Mar. PMID 15821981
    3. The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins. Carter C, et al. Plant Cell, 2004 Dec. PMID 15539469, Free PMC Article
    4. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001203904.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytosolic ribosome HDA PubMed 
    located_in plant-type vacuole HDA PubMed 
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Riboflavin synthase-like superfamily protein
    NP_001190833.1
    • Riboflavin synthase-like superfamily protein; FUNCTIONS IN: in 7 functions; INVOLVED IN: oxidation reduction; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Cytochrome b245, heavy chain (InterPro:IPR000778), EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-hand-like domain (InterPro:IPR011992), Ferric reductase-like transmembrane component, N-terminal (InterPro:IPR013130), Ferric reductase, NAD binding (InterPro:IPR013121), NADPH oxidase Respiratory burst (InterPro:IPR013623), FAD-binding 8 (InterPro:IPR013112), EF-HAND 2 (InterPro:IPR018249), Riboflavin synthase-like beta-barrel (InterPro:IPR017938); BEST Arabidopsis thaliana protein match is: NADPH/respiratory burst oxidase protein D (TAIR:AT5G51060.1).
    NP_194239.2
    • Riboflavin synthase-like superfamily protein; FUNCTIONS IN: in 7 functions; INVOLVED IN: oxidation reduction; LOCATED IN: cytosolic ribosome, vacuole; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Cytochrome b245, heavy chain (InterPro:IPR000778), EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-hand-like domain (InterPro:IPR011992), Ferric reductase-like transmembrane component, N-terminal (InterPro:IPR013130), Ferric reductase, NAD binding (InterPro:IPR013121), NADPH oxidase Respiratory burst (InterPro:IPR013623), EF-HAND 2 (InterPro:IPR018249), FAD-binding 8 (InterPro:IPR013112), Riboflavin synthase-like beta-barrel (InterPro:IPR017938); BEST Arabidopsis thaliana protein match is: NADPH/respiratory burst oxidase protein D (TAIR:AT5G51060.1); Has 2591 Blast hits to 2460 proteins in 416 species: Archae - 12; Bacteria - 368; Metazoa - 707; Fungi - 773; Plants - 526; Viruses - 0; Other Eukaryotes - 205 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      12878667..12883805 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_118641.3 → NP_194239.2  Riboflavin synthase-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194239.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JRU6, Q9SW17
      UniProtKB/TrEMBL
      A0A178UU44, A0A5S9XWB9, A0A654FSJ6
      Conserved Domains (5) summary
      cd06186
      Location:556 → 849
      NOX_Duox_like_FAD_NADP; NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide. ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX ...
      PLN02844
      Location:352 → 683
      PLN02844; oxidoreductase/ferric-chelate reductase
      pfam08030
      Location:661 → 832
      NAD_binding_6; Ferric reductase NAD binding domain
      pfam08414
      Location:81 → 179
      NADPH_Ox; Respiratory burst NADPH oxidase
      pfam13499
      Location:178 → 240
      EF-hand_7; EF-hand domain pair

    2. NM_001203904.1 → NP_001190833.1  Riboflavin synthase-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190833.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UU44, F4JRU7
      Conserved Domains (5) summary
      cd06186
      Location:544 → 837
      NOX_Duox_like_FAD_NADP; NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide. ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX ...
      cd00051
      Location:185 → 240
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
      pfam01794
      Location:338 → 489
      Ferric_reduct; Ferric reductase like transmembrane component
      pfam08030
      Location:649 → 819
      NAD_binding_6; Ferric reductase NAD binding domain
      pfam08414
      Location:84 → 178
      NADPH_Ox; Respiratory burst NADPH oxidase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SW17.2

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