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    pfkB-like carbohydrate kinase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828990, updated on 18-Sep-2024

    Summary

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    Official Full Name
    pfkB-like carbohydrate kinase family protein
    Primary source
    TAIR:AT4G28706
    Locus tag
    AT4G28706
    See related
    Araport:AT4G28706
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    14
    Sequence:
    Chromosome: 4; NC_003075.7 (14167635..14172454)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene ammonium transporter 1;4 Neighboring gene RmlC-like cupins superfamily protein Neighboring gene Myosin family protein with Dil domain-containing protein Neighboring gene Flavin-binding monooxygenase family protein Neighboring gene LOW PSII ACCUMULATION-like protein Neighboring gene Glutaredoxin family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Differential binding of calmodulin-related proteins to their targets revealed through high-density Arabidopsis protein microarrays. Popescu SC, et al. Proc Natl Acad Sci U S A, 2007 Mar 13. PMID 17360592, Free PMC Article
    2. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article
    3. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
    4. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001203934.1
    NM_119014.4
    NM_179135.4
    NM_202903.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytosol HDA PubMed 

    General protein information

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    Preferred Names
    pfkB-like carbohydrate kinase family protein
    NP_001190863.1
    • pfkB-like carbohydrate kinase family protein; FUNCTIONS IN: kinase activity, ribokinase activity; INVOLVED IN: D-ribose metabolic process; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbohydrate/purine kinase (InterPro:IPR011611), Ribokinase (InterPro:IPR002139), Carbohydrate/puine kinase, PfkB, conserved site (InterPro:IPR002173); BEST Arabidopsis thaliana protein match is: pfkB-like carbohydrate kinase family protein (TAIR:AT5G43910.2).
    NP_567816.1
    • pfkB-like carbohydrate kinase family protein; FUNCTIONS IN: kinase activity, ribokinase activity; INVOLVED IN: D-ribose metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbohydrate/purine kinase (InterPro:IPR011611), Ribokinase (InterPro:IPR002139), Carbohydrate/puine kinase, PfkB, conserved site (InterPro:IPR002173); BEST Arabidopsis thaliana protein match is: pfkB-like carbohydrate kinase family protein (TAIR:AT5G43910.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_849466.1
    • pfkB-like carbohydrate kinase family protein; FUNCTIONS IN: kinase activity, ribokinase activity; INVOLVED IN: D-ribose metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbohydrate/purine kinase (InterPro:IPR011611), Ribokinase (InterPro:IPR002139), Carbohydrate/puine kinase, PfkB, conserved site (InterPro:IPR002173); BEST Arabidopsis thaliana protein match is: pfkB-like carbohydrate kinase family protein (TAIR:AT5G43910.2); Has 7438 Blast hits to 7159 proteins in 1790 species: Archae - 225; Bacteria - 5592; Metazoa - 327; Fungi - 119; Plants - 278; Viruses - 0; Other Eukaryotes - 897 (source: NCBI BLink).
    NP_974632.1
    • pfkB-like carbohydrate kinase family protein; FUNCTIONS IN: kinase activity, ribokinase activity; INVOLVED IN: D-ribose metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbohydrate/purine kinase (InterPro:IPR011611), Ribokinase (InterPro:IPR002139), Carbohydrate/puine kinase, PfkB, conserved site (InterPro:IPR002173); BEST Arabidopsis thaliana protein match is: pfkB-like carbohydrate kinase family protein (TAIR:AT5G43910.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      14167635..14172454
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_179135.4 → NP_849466.1  pfkB-like carbohydrate kinase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849466.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V5Z2, Q8VZA8
      Conserved Domains (1) summary
      cd01945
      Location:50 → 393
      ribokinase_group_B; Ribokinase-like subgroup B. Found in bacteria and plants, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time. .

    2. NM_202903.3 → NP_974632.1  pfkB-like carbohydrate kinase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974632.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V4R1, F4JM17
      Conserved Domains (1) summary
      cd01945
      Location:50 → 392
      ribokinase_group_B; Ribokinase-like subgroup B. Found in bacteria and plants, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time. .

    3. NM_001203934.1 → NP_001190863.1  pfkB-like carbohydrate kinase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190863.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XXH8, F4JM15
      Conserved Domains (1) summary
      cd01945
      Location:50 → 393
      ribokinase_group_B; Ribokinase-like subgroup B. Found in bacteria and plants, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time. .

    4. NM_119014.4 → NP_567816.1  pfkB-like carbohydrate kinase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567816.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V4R1, Q944J2
      Conserved Domains (1) summary
      cd01945
      Location:48 → 390
      ribokinase_group_B; Ribokinase-like subgroup B. Found in bacteria and plants, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time. .
    Nucleotide Protein
    Heading Accession and Version

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