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    BCA5 beta carbonic anhydrase 5 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829498, updated on 18-Sep-2024

    Summary

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    Official Symbol
    BCA5
    Official Full Name
    beta carbonic anhydrase 5
    Primary source
    TAIR:AT4G33580
    Locus tag
    AT4G33580
    See related
    Araport:AT4G33580
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    A. THALIANA BETA CARBONIC ANHYDRASE 5; ATBCA5; beta carbonic anhydrase 5; T16L1.70; T16L1_70
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    Genomic context

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    See BCA5 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    10
    Sequence:
    Chromosome: 4; NC_003075.7 (16138251..16141624)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein Neighboring gene Wound-responsive family protein Neighboring gene RING/U-box superfamily protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis plastid carbonic anhydrase βCA5 is important for normal plant growth. Weerasooriya HN, et al. Plant Physiol, 2022 Nov 28. PMID 36149291, Free PMC Article
    2. Characterization and expression analysis of genes encoding alpha and beta carbonic anhydrases in Arabidopsis. Fabre N, et al. Plant Cell Environ, 2007 May. PMID 17407539
    3. Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. Kim TW, et al. Plant Cell, 2023 Mar 15. PMID 36660928, Free PMC Article
    4. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
    5. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001036707.1
    NM_001342222.1
    NM_119514.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables carbonate dehydratase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in carbon utilization IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    beta carbonic anhydrase 5
    NP_001031784.1
    • beta carbonic anhydrase 5 (BCA5); FUNCTIONS IN: carbonate dehydratase activity, zinc ion binding; INVOLVED IN: carbon utilization; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbonic anhydrase, prokaryotic-like, conserved site (InterPro:IPR015892), Carbonic anhydrase (InterPro:IPR001765); BEST Arabidopsis thaliana protein match is: beta carbonic anhydrase 6 (TAIR:AT1G58180.4); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_567928.1
    • beta carbonic anhydrase 5 (BCA5); FUNCTIONS IN: carbonate dehydratase activity, zinc ion binding; INVOLVED IN: carbon utilization; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbonic anhydrase, prokaryotic-like, conserved site (InterPro:IPR015892), Carbonic anhydrase (InterPro:IPR001765); BEST Arabidopsis thaliana protein match is: beta carbonic anhydrase 6 (TAIR:AT1G58180.4); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      16138251..16141624
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_119514.4 → NP_567928.1  beta carbonic anhydrase 5 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567928.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B9DHL2, F4JJ03, O81875, Q94CE3
      UniProtKB/TrEMBL
      A0A178V525, A0A5S9XYA5, A0A654FVP3
      Conserved Domains (1) summary
      PLN03006
      Location:1 → 301
      PLN03006; carbonate dehydratase

    2. NM_001036707.1 → NP_001031784.1  beta carbonic anhydrase 5 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031784.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V525, A0A5S9XYA5
      Conserved Domains (1) summary
      PLN03006
      Location:1 → 302
      PLN03006; carbonate dehydratase

    3. NM_001342222.1 → NP_001328574.1  beta carbonic anhydrase 5 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B9DHL2, F4JJ03, O81875, Q94CE3
      UniProtKB/TrEMBL
      A0A178V525, A0A5S9XYA5, A0A654FVP3
      Conserved Domains (1) summary
      PLN03006
      Location:1 → 301
      PLN03006; carbonate dehydratase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q94CE3.1

    Gene LinkOut

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