ARI1 RING/U-box superfamily protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Symbol: ARI1
Official Full Name: RING/U-box superfamily protein
Primary source: TAIR:AT4G34370
Locus tag: AT4G34370
See related: Araport:AT4G34370
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: ARABIDOPSIS ARIADNE 1; ARIADNE 1; ATARI1; F10M10.140; F10M10_140
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Genomic context

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See ARI1 in Genome Data Viewer

Location:: chromosome: 4

Exon count:: 5

Sequence:: Chromosome: 4; NC_003075.7 (16434280..16437415)

Chromosome 4 - NC_003075.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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NM_001342281.1

Supported by ESTs:

NM_119602.2

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables ubiquitin-protein transferase activity	IEA Inferred from Electronic Annotation more info
enables zinc ion binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in protein ubiquitination	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in cytoplasm	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: RING/U-box superfamily protein

NP_001320134.1

ARIADNE 1 (ARI1); FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C6HC-type (InterPro:IPR002867); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G16090.1).

NP_567966.1

ARIADNE 1 (ARI1); FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G16090.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003075.7 Reference assembly

Range

16434280..16437415

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_001342281.1 → NP_001320134.1 RING/U-box superfamily protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

F4JKP2
NM_119602.2 → NP_567966.1 RING/U-box superfamily protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_567966.1

Status: REVIEWED

UniProtKB/Swiss-Prot

Q949V6, Q9SZ02

UniProtKB/TrEMBL

A0A178V3V2, A0A5S9XYJ8, A0A654FVE5

Conserved Domains (3) summary

smart00647
Location:194 → 256

IBR; In Between Ring fingers

cd16773
Location:122 → 173

RING-HC_RBR_TRIAD1; RING finger, HC subclass, found in two RING fingers and DRIL [double RING finger linked] 1 (TRIAD1)

pfam01485
Location:284 → 313

IBR; IBR domain, a half RING-finger domain