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    DXPS3 1-deoxy-D-xylulose 5-phosphate synthase 3 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831009, updated on 18-Sep-2024

    Summary

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    Official Symbol
    DXPS3
    Official Full Name
    1-deoxy-D-xylulose 5-phosphate synthase 3
    Primary source
    TAIR:AT5G11380
    Locus tag
    AT5G11380
    See related
    Araport:AT5G11380
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    1-deoxy-D-xylulose 5-phosphate (DXP) synthase 3; 1-deoxy-D-xylulose 5-phosphate synthase 3; DXS3; F2I11.270; F2I11_270
    Summary
    Encodes a protein postulated to have 1-deoxy-D-xylulose 5-phosphate synthase activity.
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    Genomic context

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    See DXPS3 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    10
    Sequence:
    Chromosome: 5; NC_003076.8 (3629988..3633511)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene DNAse I-like superfamily protein Neighboring gene Interleukin-1 receptor-associated kinase 4 protein Neighboring gene FBD / Leucine Rich Repeat domains containing protein Neighboring gene WPP domain-interacting protein 1 Neighboring gene Protein kinase superfamily protein Neighboring gene Protein kinase superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome organization in Arabidopsis thaliana: a survey for genes involved in isoprenoid and chlorophyll metabolism. Lange BM, et al. Plant Mol Biol, 2003 Apr. PMID 12777052
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001085101.2
    NM_001343183.1
    NM_001343184.1
    NM_121176.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables 1-deoxy-D-xylulose-5-phosphate synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables 1-deoxy-D-xylulose-5-phosphate synthase activity TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in 1-deoxy-D-xylulose 5-phosphate biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in terpenoid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    1-deoxy-D-xylulose 5-phosphate synthase 3
    NP_001078570.1
    • 1-deoxy-D-xylulose 5-phosphate synthase 3 (DXPS3); FUNCTIONS IN: 1-deoxy-D-xylulose-5-phosphate synthase activity; INVOLVED IN: terpenoid biosynthetic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transketolase-like, pyrimidine-binding domain (InterPro:IPR005475); BEST Arabidopsis thaliana protein match is: Deoxyxylulose-5-phosphate synthase (TAIR:AT4G15560.1); Has 11671 Blast hits to 11637 proteins in 2411 species: Archae - 101; Bacteria - 6667; Metazoa - 252; Fungi - 0; Plants - 205; Viruses - 0; Other Eukaryotes - 4446 (source: NCBI BLink).
    NP_196699.1
    • 1-deoxy-D-xylulose 5-phosphate synthase 3 (DXPS3); FUNCTIONS IN: 1-deoxy-D-xylulose-5-phosphate synthase activity; INVOLVED IN: metabolic process, terpenoid biosynthetic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transketolase, C-terminal (InterPro:IPR005476), Deoxyxylulose-5-phosphate synthase (InterPro:IPR005477), Transketolase-like, C-terminal (InterPro:IPR015941), Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II (InterPro:IPR009014), Transketolase-like, pyrimidine-binding domain (InterPro:IPR005475); BEST Arabidopsis thaliana protein match is: Deoxyxylulose-5-phosphate synthase (TAIR:AT4G15560.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      3629988..3633511
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001085101.2 → NP_001078570.1  1-deoxy-D-xylulose 5-phosphate synthase 3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078570.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q0WUB4
      Conserved Domains (2) summary
      cd07033
      Location:386 → 539
      TPP_PYR_DXS_TK_like; Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins
      pfam13292
      Location:78 → 362
      DXP_synthase_N; 1-deoxy-D-xylulose-5-phosphate synthase

    2. NM_001343183.1 → NP_001332634.1  1-deoxy-D-xylulose 5-phosphate synthase 3 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1R7T385

    3. NM_121176.4 → NP_196699.1  1-deoxy-D-xylulose 5-phosphate synthase 3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196699.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654G078, A0A7G2FCV2, Q9LFL9
      Conserved Domains (1) summary
      PLN02225
      Location:1 → 700
      PLN02225; 1-deoxy-D-xylulose-5-phosphate synthase

    4. NM_001343184.1 → NP_001332633.1  1-deoxy-D-xylulose 5-phosphate synthase 3 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BHL8
    Nucleotide Protein
    Heading Accession and Version

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