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    RER1 reticulata-related 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832342, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RER1
    Official Full Name
    reticulata-related 1
    Primary source
    TAIR:AT5G22790
    Locus tag
    AT5G22790
    See related
    Araport:AT5G22790
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    K8E10.2; K8E10_2; reticulata-related 1
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    Genomic context

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    See RER1 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    7
    Sequence:
    Chromosome: 5; NC_003076.8 (7599081..7602522, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene alpha-adaptin Neighboring gene ncRNA Neighboring gene Adaptor protein complex AP-2, alpha subunit Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene F-box family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Functional Redundancy and Divergence within the Arabidopsis RETICULATA-RELATED Gene Family. Pérez-Pérez JM, et al. Plant Physiol, 2013 Jun. PMID 23596191, Free PMC Article
    2. Proteomics of the chloroplast envelope membranes from Arabidopsis thaliana. Ferro M, et al. Mol Cell Proteomics, 2003 May. PMID 12766230
    3. Arabidopsis G-protein interactome reveals connections to cell wall carbohydrates and morphogenesis. Klopffleisch K, et al. Mol Syst Biol, 2011 Sep 27. PMID 21952135, Free PMC Article
    4. AT_CHLORO, a comprehensive chloroplast proteome database with subplastidial localization and curated information on envelope proteins. Ferro M, et al. Mol Cell Proteomics, 2010 Jun. PMID 20061580, Free PMC Article
    5. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. RER1 gene is mainly expressed in the bundle sheath cells of expanded leaves.
      Title: Functional Redundancy and Divergence within the Arabidopsis RETICULATA-RELATED Gene Family.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_122185.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast envelope HDA PubMed 
    located_in chloroplast inner membrane HDA PubMed 
    located_in plastid HDA PubMed 

    General protein information

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    Preferred Names
    reticulata-related 1
    NP_197671.1
    • reticulata-related 1 (RER1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plastid, chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3411 (InterPro:IPR021825); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3411) (TAIR:AT2G37860.3); Has 4329 Blast hits to 1807 proteins in 262 species: Archae - 14; Bacteria - 665; Metazoa - 1748; Fungi - 324; Plants - 608; Viruses - 168; Other Eukaryotes - 802 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      7599081..7602522 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_122185.3 → NP_197671.1  reticulata-related 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197671.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FGP9
      UniProtKB/TrEMBL
      A0A178UC54, A0A5S9Y788
      Conserved Domains (1) summary
      pfam11891
      Location:208 → 387
      RETICULATA-like; Protein RETICULATA-related
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FGP9.1

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