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    hypothetical protein (DUF1997) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 833948, updated on 18-Sep-2024

    Summary

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    Official Full Name
    hypothetical protein (DUF1997)
    Primary source
    TAIR:AT5G39520
    Locus tag
    AT5G39520
    See related
    Araport:AT5G39520
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MUL8.22; MUL8_22
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    5
    Sequence:
    Chromosome: 5; NC_003076.8 (15823735..15825566, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene GNOM-like 1 Neighboring gene ncRNA Neighboring gene Vesicle transport v-SNARE family protein Neighboring gene hypothetical protein (DUF1997) Neighboring gene tRNA-Pro Neighboring gene miscRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The novel protein CSAP accelerates leaf senescence and is negatively regulated by SAUL1 in the dark. So WM, et al. Plant Cell Rep, 2020 Mar. PMID 31773253
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_123314.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within leaf senescence IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within response to abscisic acid IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    hypothetical protein (DUF1997)
    NP_198768.1
    • Protein of unknown function (DUF1997); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, 4 leaf senescence stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1997 (InterPro:IPR018971); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1997) (TAIR:AT5G39530.1); Has 157 Blast hits to 157 proteins in 60 species: Archae - 0; Bacteria - 84; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      15823735..15825566 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_123314.4 → NP_198768.1  hypothetical protein (DUF1997) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_198768.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UDH2, A0A654G6J4, Q0WW43, Q8L9Q2
      Conserved Domains (1) summary
      pfam09366
      Location:57 → 224
      DUF1997; Protein of unknown function (DUF1997)
    Nucleotide Protein
    Heading Accession and Version

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