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    PGLP2 2-phosphoglycolate phosphatase 2 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834827, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PGLP2
    Official Full Name
    2-phosphoglycolate phosphatase 2
    Primary source
    TAIR:AT5G47760
    Locus tag
    AT5G47760
    See related
    Araport:AT5G47760
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    2-phosphoglycolate phosphatase 2; ATPGLP2; ATPK5; MCA23.8; MCA23_8
    Summary
    serine/threonine protein kinase
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    Genomic context

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    See PGLP2 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    11
    Sequence:
    Chromosome: 5; NC_003076.8 (19342405..19345127, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Sec14p-like phosphatidylinositol transfer family protein Neighboring gene ncRNA Neighboring gene Adenine nucleotide alpha hydrolases-like superfamily protein Neighboring gene D6 protein kinase like 2 Neighboring gene farnesyl diphosphate synthase 1 Neighboring gene galacturonosyltransferase 4 Neighboring gene miscRNA Neighboring gene SMAD/FHA domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Cloning and characterization of a plant gene encoding a protein kinase. Hayashida N, et al. Gene, 1993 Feb 28. PMID 8444349
    2. Structural and functional insights into the regulation of Arabidopsis AGC VIIIa kinases. Zegzouti H, et al. J Biol Chem, 2006 Nov 17. PMID 16973627
    3. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
    4. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    5. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001344745.1
    NM_124150.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables phosphoglycolate phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein serine/threonine kinase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within protein phosphorylation ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plastid HDA PubMed 

    General protein information

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    Preferred Names
    2-phosphoglycolate phosphatase 2
    NP_199587.1
    • 2-phosphoglycolate phosphatase 2 (PGLP2); FUNCTIONS IN: protein serine/threonine kinase activity, phosphoglycolate phosphatase activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase, subfamily IIA (InterPro:IPR006357), 2-phosphoglycolate phosphatase, eukaryotic (InterPro:IPR006349); BEST Arabidopsis thaliana protein match is: 2-phosphoglycolate phosphatase 1 (TAIR:AT5G36700.4); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      19342405..19345127 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_124150.5 → NP_199587.1  2-phosphoglycolate phosphatase 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_199587.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8GWU0, Q8LAU0, Q9FIK4
      UniProtKB/TrEMBL
      A0A178UDX7, A0A5S9YE91
      Conserved Domains (1) summary
      PLN02645
      Location:1 → 301
      PLN02645; phosphoglycolate phosphatase

    2. NM_001344745.1 → NP_001332593.1  2-phosphoglycolate phosphatase 2 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BHG5
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8GWU0.1

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