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    ATP-dependent Clp protease [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835047, updated on 18-Sep-2024

    Summary

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    Official Full Name
    ATP-dependent Clp protease
    Primary source
    TAIR:AT5G49840
    Locus tag
    AT5G49840
    See related
    Araport:AT5G49840
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    K21G20.5; K21G20_5
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    14
    Sequence:
    Chromosome: 5; NC_003076.8 (20255173..20259982)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene methionine S-methyltransferase Neighboring gene root UVB sensitive protein (Protein of unknown function, DUF647) Neighboring gene exocyst complex component 84B Neighboring gene Mannose-binding lectin superfamily protein Neighboring gene Mannose-binding lectin superfamily protein Neighboring gene Mannose-binding lectin superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001344860.1
    NM_124362.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ATP-dependent protein folding chaperone IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables unfolded protein binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in protein folding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    ATP-dependent Clp protease
    NP_568714.4
    • ATP-dependent Clp protease; FUNCTIONS IN: unfolded protein binding, nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: protein folding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-2 (InterPro:IPR013093), Clp protease, ATP-binding subunit ClpX (InterPro:IPR004487); BEST Arabidopsis thaliana protein match is: ATP-dependent Clp protease (TAIR:AT1G33360.1); Has 32248 Blast hits to 28333 proteins in 3078 species: Archae - 765; Bacteria - 18641; Metazoa - 1800; Fungi - 1278; Plants - 1157; Viruses - 4; Other Eukaryotes - 8603 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      20255173..20259982
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001344858.1 → NP_001332697.1  ATP-dependent Clp protease [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UDP3, A0A1R7T3E8

    2. NM_001344859.1 → NP_001332696.1  ATP-dependent Clp protease [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UDP3, A0A1P8BHS9, A0A654G9V8
      Conserved Domains (1) summary
      PRK05342
      Location:189 → 565
      clpX; ATP-dependent Clp protease ATP-binding subunit ClpX

    3. NM_124362.4 → NP_568714.4  ATP-dependent Clp protease [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568714.4

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4K7F6, Q9LTA9
      UniProtKB/TrEMBL
      A0A5S9YD98, A0A7G2FEX8
      Conserved Domains (1) summary
      PRK05342
      Location:189 → 565
      clpX; ATP-dependent Clp protease ATP-binding subunit ClpX

    4. NM_001344860.1 → NP_001332698.1  ATP-dependent Clp protease [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1R7T3E9
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4K7F6.1

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