U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    CPSF160 cleavage and polyadenylation specificity factor 160 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835240, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    CPSF160
    Official Full Name
    cleavage and polyadenylation specificity factor 160
    Primary source
    TAIR:AT5G51660
    Locus tag
    AT5G51660
    See related
    Araport:AT5G51660
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATCPSF160; cleavage and polyadenylation specificity factor 160; K17N15.21; K17N15_21
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See CPSF160 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    27
    Sequence:
    Chromosome: 5; NC_003076.8 (20980005..20989499)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Disease resistance protein (TIR-NBS-LRR class) family Neighboring gene trichome birefringence-like protein (DUF828) Neighboring gene uncharacterized protein Neighboring gene hypothetical protein (DUF668) Neighboring gene ncRNA

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Altered interactions within FY/AtCPSF complexes required for Arabidopsis FCA-mediated chromatin silencing. Manzano D, et al. Proc Natl Acad Sci U S A, 2009 May 26. PMID 19439664, Free PMC Article
    2. Distinctive interactions of the Arabidopsis homolog of the 30 kD subunit of the cleavage and polyadenylation specificity factor (AtCPSF30) with other polyadenylation factor subunits. Rao S, et al. BMC Cell Biol, 2009 Jul 2. PMID 19573236, Free PMC Article
    3. Arabidopsis CLP1-SIMILAR PROTEIN3, an ortholog of human polyadenylation factor CLP1, functions in gametophyte, embryo, and postembryonic development. Xing D, et al. Plant Physiol, 2008 Dec. PMID 18971429, Free PMC Article
    4. The 73 kD subunit of the cleavage and polyadenylation specificity factor (CPSF) complex affects reproductive development in Arabidopsis. Xu R, et al. Plant Mol Biol, 2006 Jul. PMID 16897494
    5. Defective RNA processing enhances RNA silencing and influences flowering of Arabidopsis. Herr AJ, et al. Proc Natl Acad Sci U S A, 2006 Oct 10. PMID 17008405, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

    Go to the top of the page

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    NM_001344949.1
    NM_001344950.1
    NM_001344951.1
    NM_124545.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    cleavage and polyadenylation specificity factor 160
    NP_199979.2
    • cleavage and polyadenylation specificity factor 160 (CPSF160); FUNCTIONS IN: nucleic acid binding; INVOLVED IN: mRNA cleavage, mRNA polyadenylation; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cleavage/polyadenylation specificity factor, A subunit, C-terminal (InterPro:IPR004871); BEST Arabidopsis thaliana protein match is: damaged DNA binding protein 1A (TAIR:AT4G05420.2); Has 1568 Blast hits to 1022 proteins in 220 species: Archae - 0; Bacteria - 0; Metazoa - 654; Fungi - 429; Plants - 267; Viruses - 0; Other Eukaryotes - 218 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      20980005..20989499
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_124545.3 → NP_199979.2  cleavage and polyadenylation specificity factor 160 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_199979.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8H1T4, Q9FGR0
      UniProtKB/TrEMBL
      A0A5S9YFE2, A0A654GAB5
      Conserved Domains (2) summary
      COG5161
      Location:79 → 1442
      SFT1; Pre-mRNA cleavage and polyadenylation specificity factor [RNA processing and modification]
      pfam03178
      Location:1083 → 1408
      CPSF_A; CPSF A subunit region

    2. NM_001344949.1 → NP_001331731.1  cleavage and polyadenylation specificity factor 160 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BER9, A0A654GAB5

    3. NM_001344950.1 → NP_001331729.1  cleavage and polyadenylation specificity factor 160 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BEU6, A0A654GAB5

    4. NM_001344951.1 → NP_001331730.1  cleavage and polyadenylation specificity factor 160 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BES4, A0A654GAB5
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FGR0.2

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.