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    LYR family of Fe/S cluster biogenesis protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836243, updated on 18-Sep-2024

    Summary

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    Official Full Name
    LYR family of Fe/S cluster biogenesis protein
    Primary source
    TAIR:AT5G61220
    Locus tag
    AT5G61220
    See related
    Araport:AT5G61220
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MAF19.16; MAF19_16
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    3
    Sequence:
    Chromosome: 5; NC_003076.8 (24625573..24626965, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene myosin heavy chain-like protein Neighboring gene soluble N-ethylmaleimide-sensitive factor adaptor protein 33 Neighboring gene ncRNA Neighboring gene Ankyrin repeat family protein Neighboring gene Leucine-rich repeat (LRR) family protein Neighboring gene glucuronidase 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Targeted interactomics reveals a complex core cell cycle machinery in Arabidopsis thaliana. Van Leene J, et al. Mol Syst Biol, 2010 Aug 10. PMID 20706207, Free PMC Article
    2. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001345458.1
    NM_001345459.1
    NM_125515.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in iron-sulfur cluster assembly IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plastid HDA PubMed 

    General protein information

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    Preferred Names
    LYR family of Fe/S cluster biogenesis protein
    NP_200930.1
    • LYR family of Fe/S cluster biogenesis protein; CONTAINS InterPro DOMAIN/s: Complex 1 LYR protein (InterPro:IPR008011); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      24625573..24626965 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_125515.3 → NP_200930.1  LYR family of Fe/S cluster biogenesis protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200930.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178URY5, A0A384KR66, Q8L9E3
      Conserved Domains (1) summary
      cd20264
      Location:6 → 74
      Complex1_LYR_LYRM4; LYR (leucine-tyrosine-arginine) motif found in LYR motif-containing protein 4 (LYRM4) and similar proteins

    2. NM_001345459.1 → NP_001330535.1  LYR family of Fe/S cluster biogenesis protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178URY5, A0A384KR66, Q8L9E3
      Conserved Domains (1) summary
      cd20264
      Location:6 → 74
      Complex1_LYR_LYRM4; LYR (leucine-tyrosine-arginine) motif found in LYR motif-containing protein 4 (LYRM4) and similar proteins

    3. NM_001345458.1 → NP_001330536.1  LYR family of Fe/S cluster biogenesis protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178URY5, A0A384KR66, Q8L9E3
      Conserved Domains (1) summary
      cd20264
      Location:6 → 74
      Complex1_LYR_LYRM4; LYR (leucine-tyrosine-arginine) motif found in LYR motif-containing protein 4 (LYRM4) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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