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    Zim17-type zinc finger protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832786, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Zim17-type zinc finger protein
    Primary source
    TAIR:AT5G27280
    Locus tag
    AT5G27280
    See related
    Araport:AT5G27280
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F21A20.2
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    3
    Sequence:
    Chromosome: 5; NC_003076.8 (9617440..9618481)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Myb/SANT-like DNA-binding domain protein Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene ncRNA Neighboring gene stress regulated protein Neighboring gene pentatricopeptide (PPR) repeat-containing protein Neighboring gene Transcription factor IIS family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_122610.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Zim17-type zinc finger protein
    NP_198080.1
    • Zim17-type zinc finger protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, Zim17-type (InterPro:IPR007853); BEST Arabidopsis thaliana protein match is: Zim17-type zinc finger protein (TAIR:AT1G68730.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      9617440..9618481
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_122610.3 → NP_198080.1  Zim17-type zinc finger protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_198080.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UEB8, O04646, Q8LD12
      Conserved Domains (1) summary
      pfam05180
      Location:123 → 168
      zf-DNL; DNL zinc finger
    Nucleotide Protein
    Heading Accession and Version

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