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    PPR repeat protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831329, updated on 18-Sep-2024

    Summary

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    Official Full Name
    PPR repeat protein
    Primary source
    TAIR:AT5G14770
    Locus tag
    AT5G14770
    See related
    Araport:AT5G14770
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T9L3.70; T9L3_70
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    3
    Sequence:
    Chromosome: 5; NC_003076.8 (4772117..4775833, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene carbonic anhydrase 2 Neighboring gene myb domain protein 66 Neighboring gene L-aspartate oxidase Neighboring gene formate dehydrogenase Neighboring gene ARM repeat superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001343366.1
    NM_001343367.1
    NM_001343368.1
    NM_001343369.1
    NM_001343370.1

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    PPR repeat protein
    NP_001318562.1
    • Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G59900.1); Has 76339 Blast hits to 14879 proteins in 308 species: Archae - 3; Bacteria - 87; Metazoa - 1237; Fungi - 1442; Plants - 70832; Viruses - 0; Other Eukaryotes - 2738 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      4772117..4775833 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001343366.1 → NP_001318562.1  PPR repeat protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4K880, Q9LER0
      UniProtKB/TrEMBL
      A0A5S9Y4W3, A0A654G145
      Conserved Domains (3) summary
      PLN03077
      Location:53 → 636
      PLN03077; Protein ECB2; Provisional
      PLN03218
      Location:325 → 700
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:368 → 395
      PPR; PPR repeat [structural motif]

    2. NM_001343370.1 → NP_001331686.1  PPR repeat protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4K880, Q9LER0
      UniProtKB/TrEMBL
      A0A5S9Y4W3, A0A654G145
      Conserved Domains (3) summary
      PLN03077
      Location:53 → 636
      PLN03077; Protein ECB2; Provisional
      PLN03218
      Location:325 → 700
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:368 → 395
      PPR; PPR repeat [structural motif]

    3. NM_001343368.1 → NP_001331688.1  PPR repeat protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4K880, Q9LER0
      UniProtKB/TrEMBL
      A0A5S9Y4W3, A0A654G145
      Conserved Domains (3) summary
      PLN03077
      Location:53 → 636
      PLN03077; Protein ECB2; Provisional
      PLN03218
      Location:325 → 700
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:368 → 395
      PPR; PPR repeat [structural motif]

    4. NM_001343369.1 → NP_001331687.1  PPR repeat protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4K880, Q9LER0
      UniProtKB/TrEMBL
      A0A5S9Y4W3, A0A654G145
      Conserved Domains (3) summary
      PLN03077
      Location:53 → 636
      PLN03077; Protein ECB2; Provisional
      PLN03218
      Location:325 → 700
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:368 → 395
      PPR; PPR repeat [structural motif]

    5. NM_001343367.1 → NP_001331689.1  PPR repeat protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4K880, Q9LER0
      UniProtKB/TrEMBL
      A0A5S9Y4W3, A0A654G145
      Conserved Domains (3) summary
      PLN03077
      Location:53 → 636
      PLN03077; Protein ECB2; Provisional
      PLN03218
      Location:325 → 700
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:368 → 395
      PPR; PPR repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LER0.2

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