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    Tryptophan RNA-binding attenuator protein-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827453, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Tryptophan RNA-binding attenuator protein-like protein
    Primary source
    TAIR:AT4G17420
    Locus tag
    AT4G17420
    See related
    Araport:AT4G17420
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    DL4745C; FCAALL.389
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    10
    Sequence:
    Chromosome: 4; NC_003075.7 (9722354..9724707, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Ribosomal protein L23/L15e family protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene DWNN domain, a CCHC-type zinc finger Neighboring gene O-fucosyltransferase family protein Neighboring gene chromogranin (DUF1639)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. PAWH1 and PAWH2 are plant-specific components of an Arabidopsis endoplasmic reticulum-associated degradation complex. Lin L, et al. Nat Commun, 2019 Aug 2. PMID 31375683, Free PMC Article
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001160774.1
    NM_001160775.1
    NM_117845.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within endoplasmic reticulum unfolded protein response IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of ERAD pathway IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Hrd1p ubiquitin ligase complex IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in endoplasmic reticulum IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Tryptophan RNA-binding attenuator protein-like protein
    NP_001154246.1
    • Tryptophan RNA-binding attenuator protein-like; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF124 (InterPro:IPR002838), Tryptophan RNA-binding attenuator protein-like (InterPro:IPR016031); BEST Arabidopsis thaliana protein match is: Tryptophan RNA-binding attenuator protein-like (TAIR:AT5G47420.1); Has 839 Blast hits to 839 proteins in 389 species: Archae - 83; Bacteria - 626; Metazoa - 0; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 72 (source: NCBI BLink).
    NP_001154247.1
    • Tryptophan RNA-binding attenuator protein-like; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF124 (InterPro:IPR002838), Tryptophan RNA-binding attenuator protein-like (InterPro:IPR016031); BEST Arabidopsis thaliana protein match is: Tryptophan RNA-binding attenuator protein-like (TAIR:AT5G47420.1); Has 844 Blast hits to 844 proteins in 391 species: Archae - 83; Bacteria - 631; Metazoa - 0; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 72 (source: NCBI BLink).
    NP_567527.1
    • Tryptophan RNA-binding attenuator protein-like; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF124 (InterPro:IPR002838), Tryptophan RNA-binding attenuator protein-like (InterPro:IPR016031); BEST Arabidopsis thaliana protein match is: Tryptophan RNA-binding attenuator protein-like (TAIR:AT5G47420.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      9722354..9724707 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_117845.4 → NP_567527.1  Tryptophan RNA-binding attenuator protein-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567527.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V2Z6, Q84J77
      Conserved Domains (1) summary
      pfam01987
      Location:27 → 237
      AIM24; Mitochondrial biogenesis AIM24

    2. NM_001160775.1 → NP_001154247.1  Tryptophan RNA-binding attenuator protein-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154247.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XTC2, F4JP53
      Conserved Domains (1) summary
      pfam01987
      Location:27 → 227
      AIM24; Mitochondrial biogenesis AIM24

    3. NM_001160774.1 → NP_001154246.1  Tryptophan RNA-binding attenuator protein-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154246.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XTC2, F4JP54
      Conserved Domains (1) summary
      pfam01987
      Location:27 → 227
      AIM24; Mitochondrial biogenesis AIM24
    Nucleotide Protein
    Heading Accession and Version

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