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    ACD6 ankyrin repeat family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827085, updated on 10-Oct-2024

    Summary

    Official Symbol
    ACD6
    Official Full Name
    ankyrin repeat family protein
    Primary source
    TAIR:AT4G14400
    Locus tag
    AT4G14400
    See related
    Araport:AT4G14400
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ACCELERATED CELL DEATH 6; DL3240W; FCAALL.190
    Summary
    encodes a novel protein with putative ankyrin and transmembrane regions. It is a member of one of the largest uncharacterized gene families in higher plants. The gene is involved in resistance to Pseudomonas syringae.
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    Genomic context

    See ACD6 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    5
    Sequence:
    Chromosome: 4; NC_003075.7 (8294165..8299195)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene cotton fiber protein Neighboring gene histone acetyltransferase subunit NuA4-domain protein Neighboring gene Ankyrin repeat family protein Neighboring gene basic helix-loop-helix (bHLH) DNA-binding superfamily protein Neighboring gene tRNA-Thr

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Interactions

    General gene information

    NM_117519.4
    NM_179050.2
    NM_179051.1

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in cytoplasm  
    located_in endoplasmic reticulum membrane PubMed 
    located_in membrane PubMed 
    located_in membrane PubMed 
    located_in plasma membrane PubMed 

    General protein information

    Preferred Names
    ankyrin repeat family protein
    NP_567430.1
    • ACCELERATED CELL DEATH 6 (ACD6); CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT4G14390.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_849381.1
    • ACCELERATED CELL DEATH 6 (ACD6); CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT4G14390.1); Has 17569 Blast hits to 9235 proteins in 440 species: Archae - 34; Bacteria - 1047; Metazoa - 9541; Fungi - 1051; Plants - 2075; Viruses - 52; Other Eukaryotes - 3769 (source: NCBI BLink).
    NP_849382.1
    • ACCELERATED CELL DEATH 6 (ACD6); CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT4G14390.1); Has 17644 Blast hits to 9282 proteins in 441 species: Archae - 34; Bacteria - 1047; Metazoa - 9551; Fungi - 1051; Plants - 2112; Viruses - 52; Other Eukaryotes - 3797 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      8294165..8299195
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_117519.4 → NP_567430.1  ankyrin repeat family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567430.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B9DFF6, D9IWZ2, O23296, Q56YD7, Q682F8, Q8GW50, Q8LPS2
      UniProtKB/TrEMBL
      A0A346XQ96
      Conserved Domains (4) summary
      cd00204
      Location:97 → 239
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam12796
      Location:105 → 208
      Ank_2; Ankyrin repeats (3 copies)
      pfam13962
      Location:506 → 594
      PGG; Domain of unknown function
      sd00045
      Location:101 → 132
      ANK; ANK repeat [structural motif]
    2. NM_179050.2 → NP_849381.1  ankyrin repeat family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849381.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A346XQ96
      Conserved Domains (4) summary
      cd00204
      Location:31 → 173
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam12796
      Location:39 → 142
      Ank_2; Ankyrin repeats (3 copies)
      pfam13962
      Location:440 → 528
      PGG; Domain of unknown function
      sd00045
      Location:35 → 66
      ANK; ANK repeat [structural motif]
    3. NM_179051.1 → NP_849382.1  ankyrin repeat family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849382.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A346XQ96
      Conserved Domains (4) summary
      cd00204
      Location:31 → 173
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam12796
      Location:39 → 142
      Ank_2; Ankyrin repeats (3 copies)
      pfam13962
      Location:440 → 528
      PGG; Domain of unknown function
      sd00045
      Location:35 → 66
      ANK; ANK repeat [structural motif]
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