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    LBD20 LOB domain-containing protein 20 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821165, updated on 18-Sep-2024

    Summary

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    Official Symbol
    LBD20
    Official Full Name
    LOB domain-containing protein 20
    Primary source
    TAIR:AT3G03760
    Locus tag
    AT3G03760
    See related
    Araport:AT3G03760
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F20H23.21; F20H23_21; LOB domain-containing protein 20
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    Genomic context

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    See LBD20 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    2
    Sequence:
    Chromosome: 3; NC_003074.8 (943557..944834)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene F-box/kelch-repeat protein, putative (DUF295) Neighboring gene BTB-POZ and MATH domain 4 Neighboring gene SET domain protein 20 Neighboring gene Leucine-rich repeat protein kinase family protein Neighboring gene HSP20-like chaperones superfamily protein Neighboring gene hydroxyproline-rich glycoprotein family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The lateral organ boundaries domain transcription factor LBD20 functions in Fusarium wilt Susceptibility and jasmonate signaling in Arabidopsis. Thatcher LF, et al. Plant Physiol, 2012 Sep. PMID 22786889, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. LBD20 is preferentially expressed in roots and responsive to Fusarium oxysporum infection.
      Title: The lateral organ boundaries domain transcription factor LBD20 functions in Fusarium wilt Susceptibility and jasmonate signaling in Arabidopsis.
    Submit: New GeneRIF Correction

    General gene information

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    NM_111247.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within jasmonic acid mediated signaling pathway IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of defense response to fungus IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within response to jasmonic acid IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    LOB domain-containing protein 20
    NP_187026.1
    • LOB domain-containing protein 20 (LBD20); CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883), Uncharacterised conserved protein UCP038127, LOB (InterPro:IPR017394); BEST Arabidopsis thaliana protein match is: lateral organ boundaries-domain 16 (TAIR:AT2G42430.1); Has 888 Blast hits to 883 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 0; Plants - 872; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      943557..944834
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111247.2 → NP_187026.1  LOB domain-containing protein 20 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187026.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B7XG75, Q9SRV3
      UniProtKB/TrEMBL
      A0A178VCE0, A0A5S9X8V8
      Conserved Domains (1) summary
      pfam03195
      Location:51 → 150
      LOB; Lateral organ boundaries (LOB) domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SRV3.1

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