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    SWAP70 Pleckstrin homology (PH) domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817638, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SWAP70
    Official Full Name
    Pleckstrin homology (PH) domain-containing protein
    Primary source
    TAIR:AT2G30880
    Locus tag
    AT2G30880
    See related
    Araport:AT2G30880
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtSWAP70; F7F1.9; F7F1_9
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    Genomic context

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    See SWAP70 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    10
    Sequence:
    Chromosome: 2; NC_003071.7 (13142665..13146060, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene tRNA-Ala Neighboring gene glutathione S-transferase PHI 9 Neighboring gene glutathione S-transferase PHI 10 Neighboring gene Cytochrome b561/ferric reductase transmembrane protein family Neighboring gene TRICHOME BIREFRINGENCE-LIKE 43 Neighboring gene actin-related protein C1A Neighboring gene coenzyme Q 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Function of Arabidopsis SWAP70 GEF in immune response. Yamaguchi K, et al. Plant Signal Behav, 2012 Apr. PMID 22499172, Free PMC Article
    2. Learning the lipid language of plant signalling. van Leeuwen W, et al. Trends Plant Sci, 2004 Aug. PMID 15358268
    3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_179824.4
    NM_201840.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables phosphatidylinositol binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within defense response to bacterium IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in defense response to bacterium IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within signal transduction ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Pleckstrin homology (PH) domain-containing protein
    NP_850155.1
    • Pleckstrin homology (PH) domain-containing protein; FUNCTIONS IN: phosphoinositide binding; INVOLVED IN: signal transduction; LOCATED IN: plant-type cell wall; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: Pleckstrin homology-type (InterPro:IPR011993), Pleckstrin homology (InterPro:IPR001849); Has 8327 Blast hits to 6951 proteins in 819 species: Archae - 67; Bacteria - 1101; Metazoa - 4180; Fungi - 797; Plants - 557; Viruses - 16; Other Eukaryotes - 1609 (source: NCBI BLink).
    NP_973569.1
    • Pleckstrin homology (PH) domain-containing protein; FUNCTIONS IN: phosphoinositide binding; INVOLVED IN: signal transduction; LOCATED IN: plant-type cell wall; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: Pleckstrin homology-type (InterPro:IPR011993), Pleckstrin homology (InterPro:IPR001849); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      13142665..13146060 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_179824.4 → NP_850155.1  Pleckstrin homology (PH) domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850155.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VTA4, O80853, Q8VYJ6
      Conserved Domains (1) summary
      smart00233
      Location:33 → 132
      PH; Pleckstrin homology domain

    2. NM_201840.2 → NP_973569.1  Pleckstrin homology (PH) domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973569.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4IPT2
      Conserved Domains (1) summary
      smart00233
      Location:33 → 132
      PH; Pleckstrin homology domain
    Nucleotide Protein
    Heading Accession and Version

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