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    LOJ LATERAL ORGAN JUNCTION [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818508, updated on 18-Sep-2024

    Summary

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    Official Symbol
    LOJ
    Official Full Name
    LATERAL ORGAN JUNCTION
    Primary source
    TAIR:AT2G39230
    Locus tag
    AT2G39230
    See related
    Araport:AT2G39230
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    LATERAL ORGAN JUNCTION; T16B24.13; T16B24_13
    Summary
    Encodes a pentatricopeptide protein (LOJ) that is specifically expressed in lateral organ junctions.
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    Genomic context

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    See LOJ in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    1
    Sequence:
    Chromosome: 2; NC_003071.7 (16381565..16384730)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene PATATIN-like protein 6 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene RNA polymerase I specific transcription initiation factor RRN3 protein Neighboring gene Integrase-type DNA-binding superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    LATERAL ORGAN JUNCTION
    NP_181456.1
    • LATERAL ORGAN JUNCTION (LOJ); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G54980.1); Has 63662 Blast hits to 14403 proteins in 306 species: Archae - 7; Bacteria - 57; Metazoa - 980; Fungi - 1296; Plants - 59204; Viruses - 0; Other Eukaryotes - 2118 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      16381565..16384730
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_129481.2 → NP_181456.1  LATERAL ORGAN JUNCTION [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_181456.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O80958
      Conserved Domains (5) summary
      TIGR00756
      Location:487 → 518
      PPR; pentatricopeptide repeat domain (PPR motif)
      sd00004
      Location:627 → 654
      PPR; PPR repeat [structural motif]
      pfam01535
      Location:312 → 341
      PPR; PPR repeat
      pfam12854
      Location:619 → 652
      PPR_1; PPR repeat
      pfam13041
      Location:482 → 531
      PPR_2; PPR repeat family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O80958.1

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