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    ARID/BRIGHT AND ELM2 DNA-binding domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819212, updated on 18-Sep-2024

    Summary

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    Official Full Name
    ARID/BRIGHT AND ELM2 DNA-binding domain-containing protein
    Primary source
    TAIR:AT2G46040
    Locus tag
    AT2G46040
    See related
    Araport:AT2G46040
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ARID1; AT-Rich Interacting Domain 1; T3F17.31
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    3
    Sequence:
    Chromosome: 2; NC_003071.7 (18935236..18938447, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ribosomal RNA small subunit methyltransferase G Neighboring gene LDL receptor wingless signaling/trafficking chaperone Neighboring gene transcription regulatory protein SNF2 Neighboring gene ubiquitin-conjugating enzyme 6 Neighboring gene Pentatricopeptide repeat (PPR-like) superfamily protein Neighboring gene transmembrane protein-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. ARID1 is required to regulate and reinforce H3K9me2 in sperm cells in Arabidopsis. Li L, et al. Nat Commun, 2024 Aug 16. PMID 39152128, Free PMC Article
    2. Heterochromatic silencing is reinforced by ARID1-mediated small RNA movement in Arabidopsis pollen. Wu W, et al. New Phytol, 2021 Mar. PMID 32783185
    3. A reciprocal inhibition between ARID1 and MET1 in male and female gametes in Arabidopsis. Li L, et al. J Integr Plant Biol, 2017 Sep. PMID 28782297
    4. An ARID domain-containing protein within nuclear bodies is required for sperm cell formation in Arabidopsis thaliana. Zheng B, et al. PLoS Genet, 2014 Jul. PMID 25057814, Free PMC Article
    5. Arabidopsis RPD3-like histone deacetylases form multiple complexes involved in stress response. Feng C, et al. J Genet Genomics, 2021 May 20. PMID 34144927

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. ARID1 is required to regulate and reinforce H3K9me2 in sperm cells in Arabidopsis.
      Title: ARID1 is required to regulate and reinforce H3K9me2 in sperm cells in Arabidopsis.
    2. Heterochromatic silencing is reinforced by ARID1-mediated small RNA movement in Arabidopsis pollen.
      Title: Heterochromatic silencing is reinforced by ARID1-mediated small RNA movement in Arabidopsis pollen.
    3. MET1 confines ARID1 to the vegetative cell of male gametes, but ARID1 conversely represses MET1 in the central cell of female gametes.
      Title: A reciprocal inhibition between ARID1 and MET1 in male and female gametes in Arabidopsis.
    4. This study identifies a novel component required for sperm cell formation in plants and uncovers a direct positive regulatory role of ARID1 on DUO1 through association with histone acetylation. [ARID1]
      Title: An ARID domain-containing protein within nuclear bodies is required for sperm cell formation in Arabidopsis thaliana.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001337174.1
    NM_001337175.1
    NM_130167.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within pollen sperm cell differentiation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within positive regulation of gene expression IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in generative cell nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    part_of histone deacetylase complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    part_of histone deacetylase complex IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    located_in microsporocyte nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    ARID/BRIGHT AND ELM2 DNA-binding domain-containing protein
    NP_001318434.1
    • ARID/BRIGHT DNA-binding domain;ELM2 domain protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: sperm cell, male gametophyte, cultured cell, seed, pollen tube; EXPRESSED DURING: M germinated pollen stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: ELM2 (InterPro:IPR000949), ARID/BRIGHT DNA-binding domain (InterPro:IPR001606); BEST Arabidopsis thaliana protein match is: ARID/BRIGHT DNA-binding domain;ELM2 domain protein (TAIR:AT4G11400.1); Has 198 Blast hits to 184 proteins in 31 species: Archae - 0; Bacteria - 1; Metazoa - 35; Fungi - 2; Plants - 156; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      18935236..18938447 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001337174.1 → NP_001318434.1  ARID/BRIGHT AND ELM2 DNA-binding domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O82364, Q84JT7
      UniProtKB/TrEMBL
      A0A7G2EKC0
      Conserved Domains (1) summary
      cl02633
      Location:46 → 137
      ARID; ARID/BRIGHT DNA binding domain

    2. NM_001337175.1 → NP_001323826.1  ARID/BRIGHT AND ELM2 DNA-binding domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VZD3, A0A1P8AY66, A0A384KSG3
      Conserved Domains (1) summary
      cl02633
      Location:60 → 151
      ARID; ARID/BRIGHT DNA binding domain

    3. NM_130167.2 → NP_182128.2  ARID/BRIGHT AND ELM2 DNA-binding domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_182128.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O82364, Q84JT7
      UniProtKB/TrEMBL
      A0A7G2EKC0
      Conserved Domains (1) summary
      cl02633
      Location:46 → 137
      ARID; ARID/BRIGHT DNA binding domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q84JT7.1

    Gene LinkOut

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