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    Putative BCR, YbaB family COG0718 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816936, updated on 20-Oct-2024

    Summary

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    Official Full Name
    Putative BCR, YbaB family COG0718
    Primary source
    TAIR:AT2G24020
    Locus tag
    AT2G24020
    See related
    Araport:AT2G24020
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T29E15.22; T29E15_22
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    7
    Sequence:
    Chromosome: 2; NC_003071.7 (10217641..10219468, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene early nodulin-like protein 11 Neighboring gene serine carboxypeptidase-like 22 Neighboring gene serine carboxypeptidase-like 23 Neighboring gene zinc ion binding / nucleic acid binding protein Neighboring gene Low temperature and salt responsive protein family

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. STIC2 selectively binds ribosome-nascent chain complexes in the cotranslational sorting of Arabidopsis thylakoid proteins. Stolle DS, et al. EMBO J, 2024 Oct. PMID 39192033, Free PMC Article
    2. Suppressors of the Chloroplast Protein Import Mutant tic40 Reveal a Genetic Link between Protein Import and Thylakoid Biogenesis. Bédard J, et al. Plant Cell, 2017 Jul. PMID 28684427, Free PMC Article
    3. New functions of the thylakoid membrane proteome of Arabidopsis thaliana revealed by a simple, fast, and versatile fractionation strategy. Peltier JB, et al. J Biol Chem, 2004 Nov 19. PMID 15322131
    4. The oligomeric stromal proteome of Arabidopsis thaliana chloroplasts. Peltier JB, et al. Mol Cell Proteomics, 2006 Jan. PMID 16207701
    5. Proteomic study of the Arabidopsis thaliana chloroplastic envelope membrane utilizing alternatives to traditional two-dimensional electrophoresis. Froehlich JE, et al. J Proteome Res, 2003 Jul-Aug. PMID 12938931

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. STIC2 selectively binds ribosome-nascent chain complexes in the cotranslational sorting of Arabidopsis thylakoid proteins.
      Title: STIC2 selectively binds ribosome-nascent chain complexes in the cotranslational sorting of Arabidopsis thylakoid proteins.
    2. At2g24020 (STIC2) and ALB4 both participate in thylakoid protein targeting
      Title: Suppressors of the Chloroplast Protein Import Mutant tic40 Reveal a Genetic Link between Protein Import and Thylakoid Biogenesis.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_127964.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within protein import into chloroplast stroma IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast envelope HDA PubMed 
    located_in chloroplast stroma HDA PubMed 
    located_in chloroplast stroma IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast thylakoid membrane HDA PubMed 
    located_in intracellular anatomical structure IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    located_in vacuole HDA PubMed 

    General protein information

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    Preferred Names
    Putative BCR, YbaB family COG0718
    NP_001189586.1
    • Uncharacterised BCR, YbaB family COG0718; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0133 (InterPro:IPR004401); BEST Arabidopsis thaliana protein match is: Uncharacterised BCR, YbaB family COG0718 (TAIR:AT4G30620.1).
    NP_565561.1
    • Uncharacterised BCR, YbaB family COG0718; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast, chloroplast stroma, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0133 (InterPro:IPR004401); BEST Arabidopsis thaliana protein match is: Uncharacterised BCR, YbaB family COG0718 (TAIR:AT4G30620.1); Has 2239 Blast hits to 2239 proteins in 898 species: Archae - 0; Bacteria - 1882; Metazoa - 0; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 302 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      10217641..10219468 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001202657.1 → NP_001189586.1  Putative BCR, YbaB family COG0718 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189586.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O82230
      Conserved Domains (1) summary
      PRK00153
      Location:70 → 173
      PRK00153; hypothetical protein; Validated

    2. NM_127964.5 → NP_565561.1  Putative BCR, YbaB family COG0718 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565561.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4INP2, O82230, Q94AE8
      UniProtKB/TrEMBL
      A0A178VWV6, A0A5S9X0S4
      Conserved Domains (1) summary
      PRK00153
      Location:72 → 175
      PRK00153; YbaB/EbfC family nucleoid-associated protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O82230.2

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Other Literature Sources
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