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    ARM repeat superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 814698, updated on 18-Sep-2024

    Summary

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    Official Full Name
    ARM repeat superfamily protein
    Primary source
    TAIR:AT2G01690
    Locus tag
    AT2G01690
    See related
    Araport:AT2G01690
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T8O11.14; T8O11_14
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    20
    Sequence:
    Chromosome: 2; NC_003071.7 (308693..313805, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene nudix hydrolase homolog 17 Neighboring gene Ankyrin repeat family protein Neighboring gene pseudo Neighboring gene Chaperone DnaJ-domain superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis VAC14 Is Critical for Pollen Development through Mediating Vacuolar Organization. Zhang WT, et al. Plant Physiol, 2018 Aug. PMID 29884680, Free PMC Article
    2. Regulation of plant immunity through ubiquitin-mediated modulation of Ca(2+) -calmodulin-AtSR1/CAMTA3 signaling. Zhang L, et al. Plant J, 2014 Apr. PMID 24528504
    3. Proteome-wide screens for small ubiquitin-like modifier (SUMO) substrates identify Arabidopsis proteins implicated in diverse biological processes. Elrouby N, et al. Proc Natl Acad Sci U S A, 2010 Oct 5. PMID 20855607, Free PMC Article
    4. A proteomics dissection of Arabidopsis thaliana vacuoles isolated from cell culture. Jaquinod M, et al. Mol Cell Proteomics, 2007 Mar. PMID 17151019, Free PMC Article
    5. Analysis of the Arabidopsis cytosolic proteome highlights subcellular partitioning of central plant metabolism. Ito J, et al. J Proteome Res, 2011 Apr 1. PMID 21166475

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. AT2G01690 (VAC14) plays a key role in pollen germination and tube growth.
      Title: Arabidopsis VAC14 Is Critical for Pollen Development through Mediating Vacuolar Organization.
    Submit: New GeneRIF Correction

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_126230.3
    NM_201666.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in phosphatidylinositol biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within pollen development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within vacuole organization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of PAS complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    NOT located_in cytosol RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 
    located_in mitochondrion HDA PubMed 
    located_in plant-type vacuole HDA PubMed 

    General protein information

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    Preferred Names
    ARM repeat superfamily protein
    NP_565275.1
    • ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-like helical (InterPro:IPR011989), Protein of unknown function DUF3434 (InterPro:IPR021841), HEAT, type 2 (InterPro:IPR021133), Armadillo-type fold (InterPro:IPR016024); Has 6269 Blast hits to 4446 proteins in 336 species: Archae - 2; Bacteria - 171; Metazoa - 2181; Fungi - 947; Plants - 235; Viruses - 11; Other Eukaryotes - 2722 (source: NCBI BLink).
    NP_973395.1
    • ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-like helical (InterPro:IPR011989), Protein of unknown function DUF3434 (InterPro:IPR021841), HEAT, type 2 (InterPro:IPR021133), Armadillo-type fold (InterPro:IPR016024); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      308693..313805 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_126230.3 → NP_565275.1  ARM repeat superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565275.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WVB5, Q8RXM7, Q9ZU97
      UniProtKB/TrEMBL
      A0A178VZH4, A0A5S9WWC5, A0A654ER29
      Conserved Domains (3) summary
      sd00044
      Location:92 → 120
      HEAT; HEAT repeat [structural motif]
      pfam11916
      Location:430 → 608
      Vac14_Fig4_bd; Vacuolar protein 14 C-terminal Fig4p binding
      pfam12755
      Location:65 → 161
      Vac14_Fab1_bd; Vacuolar 14 Fab1-binding region

    2. NM_201666.1 → NP_973395.1  ARM repeat superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973395.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654ER29, F4IPA6
      Conserved Domains (3) summary
      sd00044
      Location:92 → 120
      HEAT; HEAT repeat [structural motif]
      pfam11916
      Location:431 → 609
      Vac14_Fig4_bd; Vacuolar protein 14 C-terminal Fig4p binding
      pfam12755
      Location:65 → 161
      Vac14_Fab1_bd; Vacuolar 14 Fab1-binding region
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9ZU97.2

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