U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    AFG1-like ATPase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817091, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    AFG1-like ATPase family protein
    Primary source
    TAIR:AT2G25530
    Locus tag
    AT2G25530
    See related
    Araport:AT2G25530
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F13B15.19; F13B15_19
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 2
    Exon count:
    14
    Sequence:
    Chromosome: 2; NC_003071.7 (10863059..10866910)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Drug/metabolite transporter superfamily protein Neighboring gene cellulose synthase A catalytic subunit 3 UDP-forming-like protein Neighboring gene pseudo Neighboring gene DNAJ heat shock N-terminal domain-containing protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help
    NM_001336001.1
    NM_128110.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    AFG1-like ATPase family protein
    NP_180123.1
    • AFG1-like ATPase family protein; FUNCTIONS IN: ATPase activity, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AFG1-like (InterPro:IPR005654); BEST Arabidopsis thaliana protein match is: AFG1-like ATPase family protein (TAIR:AT4G28070.2); Has 3822 Blast hits to 3815 proteins in 1065 species: Archae - 0; Bacteria - 1862; Metazoa - 150; Fungi - 200; Plants - 101; Viruses - 0; Other Eukaryotes - 1509 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      10863059..10866910
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_128110.3 → NP_180123.1  AFG1-like ATPase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_180123.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EW28, Q9SKJ6
      Conserved Domains (2) summary
      COG1485
      Location:112 → 642
      YhcM; Predicted ATPase [General function prediction only]
      cl21455
      Location:223 → 642
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    2. NM_001336001.1 → NP_001324719.1  AFG1-like ATPase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B0Z7, A0A654EW28
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.