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    pentatricopeptide (PPR) repeat-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842714, updated on 18-Sep-2024

    Summary

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    Official Full Name
    pentatricopeptide (PPR) repeat-containing protein
    Primary source
    TAIR:AT1G64100
    Locus tag
    AT1G64100
    See related
    Araport:AT1G64100
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F22C12.14
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (23791585..23795563)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene membrane-associated kinase regulator Neighboring gene Reticulan like protein B3 Neighboring gene NAC domain containing protein 27 Neighboring gene Putative membrane lipoprotein Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001084301.1
    NM_001334145.1
    NM_105083.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    pentatricopeptide (PPR) repeat-containing protein
    NP_001077770.1
    • pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription; EXPRESSED IN: flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441), Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G12300.1); Has 64712 Blast hits to 16196 proteins in 335 species: Archae - 3; Bacteria - 64; Metazoa - 908; Fungi - 1067; Plants - 60641; Viruses - 0; Other Eukaryotes - 2029 (source: NCBI BLink).
    NP_001319314.1
    • pentatricopeptide (PPR) repeat-containing protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G12300.1); Has 60338 Blast hits to 14770 proteins in 304 species: Archae - 4; Bacteria - 64; Metazoa - 875; Fungi - 1011; Plants - 56325; Viruses - 0; Other Eukaryotes - 2059 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      23791585..23795563
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001084301.1 → NP_001077770.1  pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077770.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A8MRJ8
      Conserved Domains (5) summary
      TIGR00756
      Location:609 → 642
      PPR; pentatricopeptide repeat domain (PPR motif)
      sd00004
      Location:263 → 290
      PPR; PPR repeat [structural motif]
      pfam02365
      Location:656 → 693
      NAM; No apical meristem (NAM) protein
      pfam12854
      Location:325 → 357
      PPR_1; PPR repeat
      pfam13041
      Location:294 → 342
      PPR_2; PPR repeat family

    2. NM_001334145.1 → NP_001319314.1  pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q1PFH0, Q9SH60
      Conserved Domains (4) summary
      TIGR00756
      Location:609 → 642
      PPR; pentatricopeptide repeat domain (PPR motif)
      sd00004
      Location:263 → 290
      PPR; PPR repeat [structural motif]
      pfam12854
      Location:325 → 357
      PPR_1; PPR repeat
      pfam13041
      Location:294 → 342
      PPR_2; PPR repeat family

    3. NM_105083.1 → NP_564822.1  pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564822.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q1PFH0, Q9SH60
      Conserved Domains (4) summary
      TIGR00756
      Location:609 → 642
      PPR; pentatricopeptide repeat domain (PPR motif)
      sd00004
      Location:263 → 290
      PPR; PPR repeat [structural motif]
      pfam12854
      Location:325 → 357
      PPR_1; PPR repeat
      pfam13041
      Location:294 → 342
      PPR_2; PPR repeat family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SH60.2

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