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    Calcium-dependent lipid-binding (CaLB domain) family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843416, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Calcium-dependent lipid-binding (CaLB domain) family protein
    Primary source
    TAIR:AT1G70790
    Locus tag
    AT1G70790
    See related
    Araport:AT1G70790
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F15H11.4; F15H11_4
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    7
    Sequence:
    Chromosome: 1; NC_003070.9 (26699321..26702544)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene Calcium-dependent lipid-binding (CaLB domain) family protein Neighboring gene Calcium-dependent lipid-binding (CaLB domain) family protein Neighboring gene phosphoglucomutase, putative / glucose phosphomutase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. LOWER TEMPERATURE 1 Enhances ABA Responses and Plant Drought Tolerance by Modulating the Stability and Localization of C2-Domain ABA-Related Proteins in Arabidopsis. Qin T, et al. Mol Plant, 2019 Sep 2. PMID 31102784
    2. CAR modulates plasma membrane nano-organization and immune signaling downstream of RALF1-FERONIA signaling pathway. Chen W, et al. New Phytol, 2023 Mar. PMID 36527240
    3. C2-domain abscisic acid-related proteins mediate the interaction of PYR/PYL/RCAR abscisic acid receptors with the plasma membrane and regulate abscisic acid sensitivity in Arabidopsis. Rodriguez L, et al. Plant Cell, 2014 Dec. PMID 25465408, Free PMC Article
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001334479.1
    NM_001334480.1
    NM_105747.3
    NM_179543.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables GTPase activator activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables phospholipid binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of GTPase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    involved_in positive regulation of abscisic acid-activated signaling pathway IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in response to abscisic acid IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in response to abscisic acid IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  

    General protein information

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    Preferred Names
    Calcium-dependent lipid-binding (CaLB domain) family protein
    NP_001319362.1
    • Calcium-dependent lipid-binding (CaLB domain) family protein; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT2G01540.1); Has 4172 Blast hits to 3576 proteins in 253 species: Archae - 0; Bacteria - 0; Metazoa - 2406; Fungi - 526; Plants - 879; Viruses - 0; Other Eukaryotes - 361 (source: NCBI BLink).
    NP_565001.1
    • Calcium-dependent lipid-binding (CaLB domain) family protein; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT2G01540.1); Has 4172 Blast hits to 3576 proteins in 253 species: Archae - 0; Bacteria - 0; Metazoa - 2406; Fungi - 526; Plants - 879; Viruses - 0; Other Eukaryotes - 361 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      26699321..26702544
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001334479.1 → NP_001319362.1  Calcium-dependent lipid-binding (CaLB domain) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9S7J9
      UniProtKB/TrEMBL
      A0A178W9M2, A0A5S9WRL3
      Conserved Domains (1) summary
      cd04038
      Location:6 → 151
      C2_ArfGAP; C2 domain present in Arf GTPase Activating Proteins (GAP)

    2. NM_179543.3 → NP_849874.1  Calcium-dependent lipid-binding (CaLB domain) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849874.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9S7J9
      UniProtKB/TrEMBL
      A0A178W9M2, A0A5S9WRL3
      Conserved Domains (1) summary
      cd04038
      Location:6 → 151
      C2_ArfGAP; C2 domain present in Arf GTPase Activating Proteins (GAP)

    3. NM_105747.3 → NP_565001.1  Calcium-dependent lipid-binding (CaLB domain) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565001.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9S7J9
      UniProtKB/TrEMBL
      A0A178W9M2, A0A5S9WRL3
      Conserved Domains (1) summary
      cd04038
      Location:6 → 151
      C2_ArfGAP; C2 domain present in Arf GTPase Activating Proteins (GAP)

    4. NM_001334480.1 → NP_001323065.1  Calcium-dependent lipid-binding (CaLB domain) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AW00
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9S7J9.1

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