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    TGA9 bZIP transcription factor family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837353, updated on 18-Sep-2024

    Summary

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    Official Symbol
    TGA9
    Official Full Name
    bZIP transcription factor family protein
    Primary source
    TAIR:AT1G08320
    Locus tag
    AT1G08320
    See related
    Araport:AT1G08320
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    bZIP21; T23G18.22; TGACG (TGA) motif-binding protein 9
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    Genomic context

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    See TGA9 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    13
    Sequence:
    Chromosome: 1; NC_003070.9 (2621860..2628594, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene no vein-like protein Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene ARM repeat superfamily protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein Neighboring gene Endomembrane protein 70 protein family

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Noshi M, et al. Plant Sci, 2016 Nov. PMID 27717447
    2. Arabidopsis basic leucine-zipper transcription factors TGA9 and TGA10 interact with floral glutaredoxins ROXY1 and ROXY2 and are redundantly required for anther development. Murmu J, et al. Plant Physiol, 2010 Nov. PMID 20805327, Free PMC Article
    3. Cross-species annotation of basic leucine zipper factor interactions: Insight into the evolution of closed interaction networks. Deppmann CD, et al. Mol Biol Evol, 2006 Aug. PMID 16731568
    4. bZIP transcription factors in Arabidopsis. Jakoby M, et al. Trends Plant Sci, 2002 Mar. PMID 11906833
    5. The TOPLESS interactome: a framework for gene repression in Arabidopsis. Causier B, et al. Plant Physiol, 2012 Jan. PMID 22065421, Free PMC Article

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. TGA9 is involved in reactive oxygen species mediated signaling during pathogen-associated molecular pattern responses.
      Title: Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22.
    2. Mutations in TGA9 and TGA10 lead to male sterility and differential defects in abaxial and adaxial anther lobe development similar to roxy1 roxy2 mutants. [TGA9]
      Title: Arabidopsis basic leucine-zipper transcription factors TGA9 and TGA10 interact with floral glutaredoxins ROXY1 and ROXY2 and are redundantly required for anther development.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001035921.3
    NM_001035922.1
    NM_001331769.1
    NM_100705.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein homodimerization activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in anther development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in hydrogen peroxide mediated signaling pathway IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in response to molecule of bacterial origin IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in response to molecule of bacterial origin IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    bZIP transcription factor family protein
    NP_001030999.1
    • bZIP transcription factor family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: bZIP transcription factor family protein (TAIR:AT5G06839.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_001318954.1
    • bZIP transcription factor family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: bZIP transcription factor family protein (TAIR:AT5G06839.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_563810.2
    • bZIP transcription factor family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: bZIP transcription factor family protein (TAIR:AT5G06839.3); Has 1141 Blast hits to 1141 proteins in 123 species: Archae - 0; Bacteria - 0; Metazoa - 138; Fungi - 49; Plants - 915; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      2621860..2628594 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001331770.1 → NP_001321503.1  bZIP transcription factor family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WT94, Q56W43, Q93XM6, Q9SGC7, Q9SJF8
      UniProtKB/TrEMBL
      A0A5S9T9F5, A0A654E8W1
      Conserved Domains (2) summary
      cd14708
      Location:178 → 230
      bZIP_HBP1b-like; Basic leucine zipper (bZIP) domain of uncharaterized BZIP transcription factors with similarity to Triticum aestivum HBP-1b: a DNA-binding and dimerization domain
      pfam14144
      Location:259 → 334
      DOG1; Seed dormancy control

    2. NM_001331769.1 → NP_001318954.1  bZIP transcription factor family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WGU6, A0A178WGY8
      Conserved Domains (2) summary
      cd14708
      Location:54 → 106
      bZIP_HBP1b-like; Basic leucine zipper (bZIP) domain of uncharaterized BZIP transcription factors with similarity to Triticum aestivum HBP-1b: a DNA-binding and dimerization domain
      pfam14144
      Location:135 → 210
      DOG1; Seed dormancy control

    3. NM_100705.4 → NP_563810.2  bZIP transcription factor family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_563810.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WT94, Q56W43, Q93XM6, Q9SGC7, Q9SJF8
      UniProtKB/TrEMBL
      A0A5S9T9F5, A0A654E8W1
      Conserved Domains (2) summary
      cd14708
      Location:178 → 230
      bZIP_HBP1b-like; Basic leucine zipper (bZIP) domain of uncharaterized BZIP transcription factors with similarity to Triticum aestivum HBP-1b: a DNA-binding and dimerization domain
      pfam14144
      Location:259 → 334
      DOG1; Seed dormancy control

    4. NM_001035922.1 → NP_001030999.1  bZIP transcription factor family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001030999.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WT94, Q56W43, Q93XM6, Q9SGC7, Q9SJF8
      UniProtKB/TrEMBL
      A0A5S9T9F5, A0A654E8W1
      Conserved Domains (2) summary
      cd14708
      Location:178 → 230
      bZIP_HBP1b-like; Basic leucine zipper (bZIP) domain of uncharaterized BZIP transcription factors with similarity to Triticum aestivum HBP-1b: a DNA-binding and dimerization domain
      pfam14144
      Location:259 → 334
      DOG1; Seed dormancy control

    5. NM_001035921.3 → NP_001030998.1  bZIP transcription factor family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001030998.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WGU6, A0A178WGY8
      Conserved Domains (2) summary
      cd14708
      Location:54 → 106
      bZIP_HBP1b-like; Basic leucine zipper (bZIP) domain of uncharaterized BZIP transcription factors with similarity to Triticum aestivum HBP-1b: a DNA-binding and dimerization domain
      pfam14144
      Location:135 → 210
      DOG1; Seed dormancy control
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q93XM6.1

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