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    DRT102 DNA-damage-repair/toleration protein (DRT102) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819648, updated on 18-Sep-2024

    Summary

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    Official Symbol
    DRT102
    Official Full Name
    DNA-damage-repair/toleration protein (DRT102)
    Primary source
    TAIR:AT3G04880
    Locus tag
    AT3G04880
    See related
    Araport:AT3G04880
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    DNA-DAMAGE-REPAIR/TOLERATION 2; T9J14.17; T9J14_17
    Summary
    encodes a novel protein involved in DNA repair from UV damage. Isolated by functional complementation of E. coli UV-sensitive mutants (UVR genes).
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    Genomic context

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    See DRT102 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    1
    Sequence:
    Chromosome: 3; NC_003074.8 (1346273..1347377, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene miscRNA Neighboring gene hypothetical protein (DUF868) Neighboring gene zeta-carotene desaturase Neighboring gene ncRNA Neighboring gene adenine phosphoribosyltransferase-like protein, putative (DUF2358) Neighboring gene Heavy metal transport/detoxification superfamily protein Neighboring gene Defensin-like (DEFL) family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Selection of Arabidopsis cDNAs that partially correct phenotypes of Escherichia coli DNA-damage-sensitive mutants and analysis of two plant cDNAs that appear to express UV-specific dark repair activities. Pang Q, et al. Plant Mol Biol, 1993 Jun. PMID 8329681
    2. Analysis of the Arabidopsis nuclear proteome and its response to cold stress. Bae MS, et al. Plant J, 2003 Dec. PMID 14617066
    3. High-throughput protein localization in Arabidopsis using Agrobacterium-mediated transient expression of GFP-ORF fusions. Koroleva OA, et al. Plant J, 2005 Jan. PMID 15610358
    4. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article
    5. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_111360.2

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within photoreactive repair IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within response to UV IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm HDA PubMed 
    located_in cytosol HDA PubMed 
    located_in nucleus HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    DNA-damage-repair/toleration protein (DRT102)
    NP_566241.1
    • DNA-DAMAGE-REPAIR/TOLERATION 2 (DRT102); INVOLVED IN: response to UV, photoreactive repair, response to cold; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribose/galactose isomerase (InterPro:IPR003500), DNA-damage-repair/toleration protein, DRT102 (InterPro:IPR012100), Cupin 2, conserved barrel (InterPro:IPR013096), Cupin, RmlC-type (InterPro:IPR011051), RmlC-like jelly roll fold (InterPro:IPR014710); Has 4975 Blast hits to 4975 proteins in 1551 species: Archae - 4; Bacteria - 3564; Metazoa - 0; Fungi - 71; Plants - 32; Viruses - 0; Other Eukaryotes - 1304 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      1346273..1347377 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111360.2 → NP_566241.1  DNA-damage-repair/toleration protein (DRT102) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566241.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q05212, Q941E8
      UniProtKB/TrEMBL
      A0A178VBH3, A0A5S9X9F4, A0A654F5J7, A0A7G2EMH5
      Conserved Domains (2) summary
      pfam02502
      Location:14 → 138
      LacAB_rpiB; Ribose/Galactose Isomerase
      cl21464
      Location:220 → 284
      cupin_like; Conserved domain found in cupin and related proteins
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q05212.2

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