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    Ribosomal protein S7e family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821308, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Ribosomal protein S7e family protein
    Primary source
    TAIR:AT3G02560
    Locus tag
    AT3G02560
    See related
    Araport:AT3G02560
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F16B3.19; F16B3_19
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    5
    Sequence:
    Chromosome: 3; NC_003074.8 (541708..543385)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene LOB domain-containing protein 41 Neighboring gene uncharacterized protein Neighboring gene Mannose-6-phosphate isomerase, type I Neighboring gene sterol 1 Neighboring gene Fatty acid hydroxylase superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. High heterogeneity within the ribosomal proteins of the Arabidopsis thaliana 80S ribosome. Giavalisco P, et al. Plant Mol Biol, 2005 Mar. PMID 15821981
    2. Identification and dynamics of Arabidopsis adaptor protein-2 complex and its involvement in floral organ development. Yamaoka S, et al. Plant Cell, 2013 Aug. PMID 23975897, Free PMC Article
    3. Proteomic analysis of the 26S proteasome reveals its direct interaction with transit peptides of plastid protein precursors for their degradation. Sako K, et al. J Proteome Res, 2014 Jul 3. PMID 24846764
    4. Analysis of the Arabidopsis cytosolic ribosome proteome provides detailed insights into its components and their post-translational modification. Carroll AJ, et al. Mol Cell Proteomics, 2008 Feb. PMID 17934214
    5. In Planta Determination of the mRNA-Binding Proteome of Arabidopsis Etiolated Seedlings. Reichel M, et al. Plant Cell, 2016 Oct. PMID 27729395, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001337417.1
    NM_111124.4
    NM_180173.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding HDA PubMed 
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    NOT located_in Golgi apparatus RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 
    located_in chloroplast HDA PubMed 
    located_in cytosol HDA PubMed 
    located_in cytosolic ribosome HDA PubMed 
    part_of cytosolic small ribosomal subunit HDA PubMed 

    General protein information

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    Preferred Names
    Ribosomal protein S7e family protein
    NP_001319452.1
    • Ribosomal protein S7e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, chloroplast, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S7e (InterPro:IPR000554); BEST Arabidopsis thaliana protein match is: Ribosomal protein S7e family protein (TAIR:AT5G16130.1); Has 785 Blast hits to 785 proteins in 311 species: Archae - 0; Bacteria - 0; Metazoa - 354; Fungi - 147; Plants - 160; Viruses - 0; Other Eukaryotes - 124 (source: NCBI BLink).
    NP_186905.1
    • Ribosomal protein S7e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, chloroplast, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S7e (InterPro:IPR000554); BEST Arabidopsis thaliana protein match is: Ribosomal protein S7e family protein (TAIR:AT5G16130.1); Has 785 Blast hits to 785 proteins in 311 species: Archae - 0; Bacteria - 0; Metazoa - 354; Fungi - 147; Plants - 160; Viruses - 0; Other Eukaryotes - 124 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      541708..543385
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111124.4 → NP_186905.1  Ribosomal protein S7e family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_186905.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9M885
      UniProtKB/TrEMBL
      A0A178VB48, A0A5S9X8G9, A0A654G1M2
      Conserved Domains (1) summary
      pfam01251
      Location:7 → 188
      Ribosomal_S7e; Ribosomal protein S7e

    2. NM_001337417.1 → NP_001319452.1  Ribosomal protein S7e family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9M885
      UniProtKB/TrEMBL
      A0A178VB48, A0A5S9X8G9, A0A654G1M2
      Conserved Domains (1) summary
      pfam01251
      Location:7 → 188
      Ribosomal_S7e; Ribosomal protein S7e

    3. NM_180173.2 → NP_850504.1  Ribosomal protein S7e family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850504.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9M885
      UniProtKB/TrEMBL
      A0A178VB48, A0A5S9X8G9, A0A654G1M2
      Conserved Domains (1) summary
      pfam01251
      Location:7 → 188
      Ribosomal_S7e; Ribosomal protein S7e
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9M885.1

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