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    HON4 winged-helix DNA-binding transcription factor family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821328, updated on 18-Sep-2024

    Summary

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    Official Symbol
    HON4
    Official Full Name
    winged-helix DNA-binding transcription factor family protein
    Primary source
    TAIR:AT3G18035
    Locus tag
    AT3G18035
    See related
    Araport:AT3G18035
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    HISTONE H1
    Summary
    A linker histone like protein
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    Genomic context

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    See HON4 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    4
    Sequence:
    Chromosome: 3; NC_003074.8 (6168963..6172005, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene WUSCHEL related homeobox 1 Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene HAL3-like protein A Neighboring gene MAP kinase 9 Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Linker histone H1 modulates defense priming and immunity in plants. Sheikh AH, et al. Nucleic Acids Res, 2023 May 22. PMID 36840717, Free PMC Article
    2. Histone H1 prevents non-CG methylation-mediated small RNA biogenesis in Arabidopsis heterochromatin. Choi J, et al. Elife, 2021 Dec 1. PMID 34850679, Free PMC Article
    3. The Linker Histone GH1-HMGA1 Is Involved in Telomere Stability and DNA Damage Repair. Charbonnel C, et al. Plant Physiol, 2018 May. PMID 29622687, Free PMC Article
    4. Homodimerization of HYL1 ensures the correct selection of cleavage sites in primary miRNA. Yang X, et al. Nucleic Acids Res, 2014 Oct 29. PMID 25294831, Free PMC Article
    5. Telomerase Interaction Partners-Insight from Plants. Fulnečková J, et al. Int J Mol Sci, 2021 Dec 29. PMID 35008793, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Linker histone H1 modulates defense priming and immunity in plants.
      Title: Linker histone H1 modulates defense priming and immunity in plants.
    2. Histone H1 prevents non-CG methylation-mediated small RNA biogenesis in Arabidopsis heterochromatin.
      Title: Histone H1 prevents non-CG methylation-mediated small RNA biogenesis in Arabidopsis heterochromatin.
    3. GH1-HMGA1 is involved directly in the repair process by allowing the completion of homologous recombination.
      Title: The Linker Histone GH1-HMGA1 Is Involved in Telomere Stability and DNA Damage Repair.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001338318.1
    NM_112685.4

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    involved_in nucleosome assembly IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of nucleosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    winged-helix DNA-binding transcription factor family protein
    NP_188431.3
    • HON4; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), A.T hook-like (InterPro:IPR020478), AT hook, DNA-binding motif (InterPro:IPR017956), Histone H1/H5 (InterPro:IPR005818); BEST Arabidopsis thaliana protein match is: high mobility group A5 (TAIR:AT1G48620.1); Has 2301 Blast hits to 2184 proteins in 377 species: Archae - 0; Bacteria - 351; Metazoa - 868; Fungi - 344; Plants - 528; Viruses - 17; Other Eukaryotes - 193 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      6168963..6172005 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112685.4 → NP_188431.3  winged-helix DNA-binding transcription factor family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_188431.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XER3, Q9LSK7
      Conserved Domains (1) summary
      smart00526
      Location:64 → 126
      H15; Domain in histone families 1 and 5

    2. NM_001338318.1 → NP_001325770.1  winged-helix DNA-binding transcription factor family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LM89
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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