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    auxin-responsive GH3 family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841289, updated on 18-Sep-2024

    Summary

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    Official Full Name
    auxin-responsive GH3 family protein
    Primary source
    TAIR:AT1G48670
    Locus tag
    AT1G48670
    See related
    Araport:AT1G48670
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F11I4.14; F11I4_14
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    3
    Sequence:
    Chromosome: 1; NC_003070.9 (17998795..18001289, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Transmembrane amino acid transporter family protein Neighboring gene DEA(D/H)-box RNA helicase family protein Neighboring gene Auxin-responsive GH3 family protein Neighboring gene pseudo Neighboring gene Auxin-responsive GH3 family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    auxin-responsive GH3 family protein
    NP_175300.1
    • auxin-responsive GH3 family protein; CONTAINS InterPro DOMAIN/s: GH3 auxin-responsive promoter (InterPro:IPR004993); BEST Arabidopsis thaliana protein match is: Auxin-responsive GH3 family protein (TAIR:AT1G48660.1); Has 1327 Blast hits to 1306 proteins in 228 species: Archae - 0; Bacteria - 396; Metazoa - 53; Fungi - 2; Plants - 668; Viruses - 0; Other Eukaryotes - 208 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      17998795..18001289 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001333347.1 → NP_001321105.1  auxin-responsive GH3 family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8APW1

    2. NM_103763.2 → NP_175300.1  auxin-responsive GH3 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175300.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WM73, A0A5S9WN16, Q9C736
      Conserved Domains (2) summary
      cl21606
      Location:8 → 521
      PLN02247; indole-3-acetic acid-amido synthetase
      pfam03321
      Location:11 → 502
      GH3; GH3 auxin-responsive promoter
    Nucleotide Protein
    Heading Accession and Version

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