U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    TPS2 trehalose-6-phosphate synthase [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838269, updated on 18-Sep-2024

    Summary

    Official Symbol
    TPS2
    Official Full Name
    trehalose-6-phosphate synthase
    Primary source
    TAIR:AT1G16980
    Locus tag
    AT1G16980
    See related
    Araport:AT1G16980
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATTPS2; F6I1.1; F6I1_1; TREHALOSE -6-PHOSPHATASE SYNTHASE S2; trehalose-phosphatase/synthase 2
    Summary
    Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that may or may not be active but no trehalose phosphatase (TPP)-like domain.
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See TPS2 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    17
    Sequence:
    Chromosome: 1; NC_003070.9 (5807200..5811610)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Ubiquitin domain-containing protein Neighboring gene ATP-dependent DNA helicase 2 subunit Ku70-like protein Neighboring gene trehalose-phosphatase/synthase 3 Neighboring gene 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein

    General gene information

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    enables glycosyltransferase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Process Evidence Code Pubs
    involved_in trehalose biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within trehalose biosynthetic process ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
     

    General protein information

    Preferred Names
    trehalose-6-phosphate synthase
    NP_173142.2
    • trehalose-phosphatase/synthase 2 (TPS2); CONTAINS InterPro DOMAIN/s: Alpha,alpha-trehalose-phosphate synthase (InterPro:IPR012766), Glycosyl transferase, family 20 (InterPro:IPR001830), Trehalose-phosphatase (InterPro:IPR003337); BEST Arabidopsis thaliana protein match is: trehalose-phosphatase/synthase 3 (TAIR:AT1G17000.1); Has 3329 Blast hits to 3259 proteins in 973 species: Archae - 45; Bacteria - 1730; Metazoa - 120; Fungi - 651; Plants - 352; Viruses - 0; Other Eukaryotes - 431 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      5807200..5811610
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101559.2NP_173142.2  trehalose-6-phosphate synthase [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4I627, Q9FZ57
      UniProtKB/TrEMBL
      A0A5S9USR7, A0A654EC27
      Conserved Domains (1) summary
      PLN03063
      Location:2786
      PLN03063; alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
    2. NM_001332273.1NP_001321461.1  trehalose-6-phosphate synthase [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AQY2