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    SOBER1 carboxylesterase [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828325, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SOBER1
    Official Full Name
    carboxylesterase
    Primary source
    TAIR:AT4G22300
    Locus tag
    AT4G22300
    See related
    Araport:AT4G22300
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    SUPPRESSOR OF AVRBST-ELICITED RESISTANCE 1; T10I14.130; T10I14_130
    Summary
    encodes a carboxylesterase that inhibits AvrBsT-triggered phenotypes in Arabidopsis
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    Genomic context

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    See SOBER1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    6
    Sequence:
    Chromosome: 4; NC_003075.7 (11787299..11789312, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Ubiquitin C-terminal hydrolases superfamily protein Neighboring gene Ubiquitin-specific protease family C19-related protein Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene Uncharacterized protein family (UPF0041) Neighboring gene golgin family A protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis thaliana SOBER1 (SUPPRESSOR OF AVRBST-ELICITED RESISTANCE 1) suppresses plant immunity triggered by multiple bacterial acetyltransferase effectors. Choi S, et al. New Phytol, 2018 Jul. PMID 29577317
    2. A hydrophobic anchor mechanism defines a deacetylase family that suppresses host response against YopJ effectors. Bürger M, et al. Nat Commun, 2017 Dec 19. PMID 29259199, Free PMC Article
    3. AvrBsT acetylates Arabidopsis ACIP1, a protein that associates with microtubules and is required for immunity. Cheong MS, et al. PLoS Pathog, 2014 Feb. PMID 24586161, Free PMC Article
    4. SOBER1 phospholipase activity suppresses phosphatidic acid accumulation and plant immunity in response to bacterial effector AvrBsT. Kirik A, et al. Proc Natl Acad Sci U S A, 2009 Dec 1. PMID 19918071, Free PMC Article
    5. Quantitative proteomics reveals dynamic changes in the plasma membrane during Arabidopsis immune signaling. Elmore JM, et al. Mol Cell Proteomics, 2012 Apr. PMID 22215637, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. SOBER1 is required for the suppression of bacterial effector HopZ5-triggered immunity in Arabidopsis.SOBER1 suppresses immunity triggered by multiple bacterial acetyltransferases.
      Title: Arabidopsis thaliana SOBER1 (SUPPRESSOR OF AVRBST-ELICITED RESISTANCE 1) suppresses plant immunity triggered by multiple bacterial acetyltransferase effectors.
    2. protein SOBER1 suppresses bacterial effector AvrBsT-incited hypersensitive response (HR) in Arabidopsis. SOBER1's biological function is not restricted to Arabidopsis thaliana and not limited to suppress HR induced by AvrBsT.
      Title: A hydrophobic anchor mechanism defines a deacetylase family that suppresses host response against YopJ effectors.
    3. SOBER1 phospholipase activity suppresses phosphatidic acid accumulation and plant immunity in response to bacterial effector AvrBsT.
      Title: SOBER1 phospholipase activity suppresses phosphatidic acid accumulation and plant immunity in response to bacterial effector AvrBsT.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_118356.4

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    carboxylesterase
    NP_193961.3
    • SUPPRESSOR OF AVRBST-ELICITED RESISTANCE 1 (SOBER1); FUNCTIONS IN: carboxylesterase activity; INVOLVED IN: defense response, incompatible interaction, regulation of plant-type hypersensitive response; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase/carboxylesterase (InterPro:IPR003140); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT4G22305.1); Has 4896 Blast hits to 2727 proteins in 833 species: Archae - 28; Bacteria - 2331; Metazoa - 701; Fungi - 503; Plants - 344; Viruses - 0; Other Eukaryotes - 989 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      11787299..11789312 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_118356.4 → NP_193961.3  carboxylesterase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193961.3

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A4KWB1, Q8GYK2
      UniProtKB/TrEMBL
      A0A178V3R8
      Conserved Domains (2) summary
      COG0596
      Location:51 → 180
      MhpC; Pimeloyl-ACP methyl ester carboxylesterase [Coenzyme transport and metabolism, General function prediction only]
      cl21494
      Location:51 → 252
      Abhydrolase; alpha/beta hydrolases
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8GYK2.1

    Gene LinkOut

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