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    Rhamnogalacturonate lyase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828545, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Rhamnogalacturonate lyase family protein
    Primary source
    TAIR:AT4G24430
    Locus tag
    AT4G24430
    See related
    Araport:AT4G24430
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T22A6.260; T22A6_260
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    13
    Sequence:
    Chromosome: 4; NC_003075.7 (12629951..12633132)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S) Neighboring gene phosphoglucan, water dikinase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A proteomics dissection of Arabidopsis thaliana vacuoles isolated from cell culture. Jaquinod M, et al. Mol Cell Proteomics, 2007 Mar. PMID 17151019, Free PMC Article
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001341672.1
    NM_118576.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables carbohydrate binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables lyase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables rhamnogalacturonan endolyase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plant-type vacuole HDA PubMed 

    General protein information

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    Preferred Names
    Rhamnogalacturonate lyase family protein
    NP_567703.4
    • Rhamnogalacturonate lyase family protein; FUNCTIONS IN: lyase activity; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Rhamnogalacturonate lyase (InterPro:IPR010325), Carbohydrate-binding-like fold (InterPro:IPR013784), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: Rhamnogalacturonate lyase family protein (TAIR:AT1G09890.1); Has 287 Blast hits to 273 proteins in 60 species: Archae - 0; Bacteria - 42; Metazoa - 0; Fungi - 83; Plants - 162; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      12629951..12633132
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_118576.6 → NP_567703.4  Rhamnogalacturonate lyase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567703.4

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V039, Q9STV1
      Conserved Domains (3) summary
      pfam06045
      Location:2 → 204
      Rhamnogal_lyase; Rhamnogalacturonate lyase family
      pfam14683
      Location:445 → 636
      CBM-like; Polysaccharide lyase family 4, domain III
      pfam14686
      Location:337 → 435
      fn3_3; Polysaccharide lyase family 4, domain II

    2. NM_001341672.1 → NP_001328675.1  Rhamnogalacturonate lyase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B5E6, Q5XF41
    Nucleotide Protein
    Heading Accession and Version

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