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    OPT6 oligopeptide transporter 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828887, updated on 23-Sep-2024

    Summary

    Official Symbol
    OPT6
    Official Full Name
    oligopeptide transporter 1
    Primary source
    TAIR:AT4G27730
    Locus tag
    AT4G27730
    See related
    Araport:AT4G27730
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6; ATOPT6; oligopeptide transporter 1; T29A15.220; T29A15_220
    Summary
    oligopeptide transporter
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    Genomic context

    See OPT6 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    4
    Sequence:
    Chromosome: 4; NC_003075.7 (13833807..13836661, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene vacuolar protein sorting 26B Neighboring gene Rhodanese/Cell cycle control phosphatase superfamily protein Neighboring gene cytochrome P450, family 709, subfamily B, polypeptide 3 Neighboring gene Major facilitator superfamily protein Neighboring gene ncRNA Neighboring gene Yippee family putative zinc-binding protein Neighboring gene Yippee family putative zinc-binding protein Neighboring gene binding protein

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    General gene information

    NM_118912.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables oligopeptide transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables oligopeptide transmembrane transporter activity IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    enables oligopeptide transmembrane transporter activity ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Process Evidence Code Pubs
    acts_upstream_of_or_within oligopeptide transport IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
     
    located_in membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 

    General protein information

    Preferred Names
    oligopeptide transporter 1
    NP_194503.1
    • oligopeptide transporter 1 (OPT6); FUNCTIONS IN: oligopeptide transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Tetrapeptide transporter, OPT1/isp4 (InterPro:IPR004648), Oligopeptide transporter OPT superfamily (InterPro:IPR004813); BEST Arabidopsis thaliana protein match is: oligopeptide transporter 9 (TAIR:AT5G53510.1); Has 1157 Blast hits to 1133 proteins in 115 species: Archae - 0; Bacteria - 21; Metazoa - 0; Fungi - 800; Plants - 327; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      13833807..13836661 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_118912.6NP_194503.1  oligopeptide transporter 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194503.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9T095
      UniProtKB/TrEMBL
      A0A178V498, A0A5S9XWG3, A0A654FTG2
      Conserved Domains (1) summary
      TIGR00728
      Location:22699
      OPT_sfam; oligopeptide transporter, OPT superfamily