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    TET3 tetraspanin3 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 823702, updated on 18-Sep-2024

    Summary

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    Official Symbol
    TET3
    Official Full Name
    tetraspanin3
    Primary source
    TAIR:AT3G45600
    Locus tag
    AT3G45600
    See related
    Araport:AT3G45600
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    tetraspanin3
    Summary
    Member of TETRASPANIN family
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    Genomic context

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    See TET3 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    2
    Sequence:
    Chromosome: 3; NC_003074.8 (16733755..16735951, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene RING/U-box protein with C6HC-type zinc finger Neighboring gene ncRNA Neighboring gene splicing endonuclease 1 Neighboring gene ncRNA Neighboring gene Dof-type zinc finger DNA-binding family protein Neighboring gene Transducin/WD40 repeat-like superfamily protein Neighboring gene RNA binding (RRM/RBD/RNP motifs) family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Functional Analysis of the Arabidopsis TETRASPANIN Gene Family in Plant Growth and Development. Wang F, et al. Plant Physiol, 2015 Nov. PMID 26417009, Free PMC Article
    2. Arabidopsis Tetraspanins Facilitate Virus Infection via Membrane-Recognition GCCK/RP Motif and Cysteine Residues. Zhu T, et al. Front Plant Sci, 2022. PMID 35310653, Free PMC Article
    3. Identification of new intrinsic proteins in Arabidopsis plasma membrane proteome. Marmagne A, et al. Mol Cell Proteomics, 2004 Jul. PMID 15060130
    4. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
    5. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001339211.1
    NM_114429.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in auxin-activated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytosol HDA PubMed 
    located_in plasma membrane HDA PubMed 
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasmodesma HDA PubMed 
    located_in plasmodesma IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tetraspanin3
    NP_190146.1
    • tetraspanin3 (TET3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: aging; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetraspanin (InterPro:IPR018499), Tetraspanin, subgroup (InterPro:IPR000301); BEST Arabidopsis thaliana protein match is: tetraspanin4 (TAIR:AT5G60220.1); Has 665 Blast hits to 663 proteins in 63 species: Archae - 0; Bacteria - 0; Metazoa - 224; Fungi - 0; Plants - 435; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      16733755..16735951 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_114429.2 → NP_190146.1  tetraspanin3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190146.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9M1E7
      UniProtKB/TrEMBL
      A0A178VNK4, A0A5S9XIX2
      Conserved Domains (1) summary
      pfam00335
      Location:4 → 249
      Tetraspannin; Tetraspanin family

    2. NM_001339211.1 → NP_001326332.1  tetraspanin3 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LNY5
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9M1E7.1

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