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    Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824494, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein
    Primary source
    TAIR:AT3G53270
    Locus tag
    AT3G53270
    See related
    Araport:AT3G53270
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    9
    Sequence:
    Chromosome: 3; NC_003074.8 (19750047..19753280, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene SAUR-like auxin-responsive protein family Neighboring gene phenylalanine ammonia-lyase 2 Neighboring gene cytochrome p450 71b5 Neighboring gene cytochrome P450, family 71, subfamily B, polypeptide 30 pseudogene

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001084807.2
    NM_001203147.1
    NM_001339605.1
    NM_001339606.1
    NM_001339607.1
    NM_115187.2
    NM_180358.1
    NM_180359.2
    NM_202693.2

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein
    NP_001078276.1
    • Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small nuclear RNA activating complex (SNAPc), subunit SNAP43 (InterPro:IPR019188); Has 91 Blast hits to 91 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 48; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
    NP_001190076.1
    • Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small nuclear RNA activating complex (SNAPc), subunit SNAP43 (InterPro:IPR019188).
    NP_566983.1
    • Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein; CONTAINS InterPro DOMAIN/s: Small nuclear RNA activating complex (SNAPc), subunit SNAP43 (InterPro:IPR019188); Has 91 Blast hits to 91 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 48; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
    NP_850689.1
    • Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein; CONTAINS InterPro DOMAIN/s: Small nuclear RNA activating complex (SNAPc), subunit SNAP43 (InterPro:IPR019188); Has 91 Blast hits to 91 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 48; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
    NP_850690.1
    • Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein; CONTAINS InterPro DOMAIN/s: Small nuclear RNA activating complex (SNAPc), subunit SNAP43 (InterPro:IPR019188); Has 91 Blast hits to 91 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 48; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
    NP_974422.1
    • Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein; CONTAINS InterPro DOMAIN/s: Small nuclear RNA activating complex (SNAPc), subunit SNAP43 (InterPro:IPR019188); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      19750047..19753280 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_180359.2 → NP_850690.1  Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850690.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VFE0, A0A384LN59, A0A654FGA6, Q8RXK3
      Conserved Domains (1) summary
      pfam09808
      Location:6 → 199
      SNAPc_SNAP43; Small nuclear RNA activating complex (SNAPc), subunit SNAP43

    2. NM_202693.2 → NP_974422.1  Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974422.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VFE0, A0A384LN59, A0A654FGA6, Q8RXK3
      Conserved Domains (1) summary
      pfam09808
      Location:6 → 199
      SNAPc_SNAP43; Small nuclear RNA activating complex (SNAPc), subunit SNAP43

    3. NM_180358.1 → NP_850689.1  Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850689.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VFE0, A0A384LN59, A0A654FGA6, Q8RXK3
      Conserved Domains (1) summary
      pfam09808
      Location:6 → 199
      SNAPc_SNAP43; Small nuclear RNA activating complex (SNAPc), subunit SNAP43

    4. NM_115187.2 → NP_566983.1  Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566983.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VFE0, A0A384LN59, A0A654FGA6, Q8RXK3
      Conserved Domains (1) summary
      pfam09808
      Location:6 → 199
      SNAPc_SNAP43; Small nuclear RNA activating complex (SNAPc), subunit SNAP43

    5. NM_001339605.1 → NP_001326731.1  Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VFE0, A0A384LN59, A0A654FGA6, Q8RXK3
      Conserved Domains (1) summary
      pfam09808
      Location:6 → 199
      SNAPc_SNAP43; Small nuclear RNA activating complex (SNAPc), subunit SNAP43

    6. NM_001084807.2 → NP_001078276.1  Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078276.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VFE0, A0A384LN59, A0A654FGA6, Q8RXK3
      Conserved Domains (1) summary
      pfam09808
      Location:6 → 199
      SNAPc_SNAP43; Small nuclear RNA activating complex (SNAPc), subunit SNAP43

    7. NM_001339606.1 → NP_001326729.1  Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VFE0, A0A384LN59, A0A654FGA6, Q8RXK3
      Conserved Domains (1) summary
      pfam09808
      Location:6 → 199
      SNAPc_SNAP43; Small nuclear RNA activating complex (SNAPc), subunit SNAP43

    8. NM_001339607.1 → NP_001326730.1  Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VFE0, A0A384LN59, A0A654FGA6, Q8RXK3
      Conserved Domains (1) summary
      pfam09808
      Location:6 → 199
      SNAPc_SNAP43; Small nuclear RNA activating complex (SNAPc), subunit SNAP43

    9. NM_001203147.1 → NP_001190076.1  Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190076.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FGA6, F4J9B1
      Conserved Domains (1) summary
      pfam09808
      Location:6 → 199
      SNAPc_SNAP43; Small nuclear RNA activating complex (SNAPc), subunit SNAP43
    Nucleotide Protein
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