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    TRM19 afadin [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824522, updated on 18-Sep-2024

    Summary

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    Official Symbol
    TRM19
    Official Full Name
    afadin
    Primary source
    TAIR:AT3G53540
    Locus tag
    AT3G53540
    See related
    Araport:AT3G53540
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    TON1 Recruiting Motif 19
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    Genomic context

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    See TRM19 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    5
    Sequence:
    Chromosome: 3; NC_003074.8 (19846647..19851045, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene UDP-glucuronic acid decarboxylase 1 Neighboring gene ncRNA Neighboring gene Chloroplast-targeted copper chaperone protein Neighboring gene FBD-like domain family protein Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene serine/threonine-protein kinase AFC1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001339620.1
    NM_115214.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    afadin
    NP_190922.3
    • unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3741 (InterPro:IPR022212); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3741) (TAIR:AT4G28760.2); Has 1710 Blast hits to 868 proteins in 206 species: Archae - 2; Bacteria - 409; Metazoa - 304; Fungi - 204; Plants - 304; Viruses - 2; Other Eukaryotes - 485 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      19846647..19851045 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115214.5 → NP_190922.3  afadin [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190922.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VEW1, A0A384KEG2, A0A5S9XKL0, A0A654FFG2, F4JAG7
      Conserved Domains (3) summary
      pfam12552
      Location:171 → 215
      DUF3741; Protein of unknown function (DUF3741)
      pfam14309
      Location:778 → 917
      DUF4378; Domain of unknown function (DUF4378)
      pfam14383
      Location:81 → 101
      VARLMGL; DUF761-associated sequence motif

    2. NM_001339620.1 → NP_001326389.1  afadin [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LP47, Q9LFG5
    Nucleotide Protein
    Heading Accession and Version

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