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    MEF18 mitochondrial editing factor 18 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832021, updated on 18-Sep-2024

    Summary

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    Official Symbol
    MEF18
    Official Full Name
    mitochondrial editing factor 18
    Primary source
    TAIR:AT5G19020
    Locus tag
    AT5G19020
    See related
    Araport:AT5G19020
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    mitochondrial editing factor 18; mitochondrial editing factor 18; T16G12.60; T16G12_60
    Summary
    Encodes a pentatricopeptide repeat protein (PPR) protein involved in mitochondrial mRNA editing.
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    Genomic context

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    See MEF18 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    1
    Sequence:
    Chromosome: 5; NC_003076.8 (6352591..6354956, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene BTB-POZ and MATH domain 1 Neighboring gene mitogen-activated protein kinase 16 Neighboring gene pseudo Neighboring gene Ribosomal protein L34e superfamily protein Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Reverse genetic screening identifies five E-class PPR proteins involved in RNA editing in mitochondria of Arabidopsis thaliana. Takenaka M, et al. J Biol Chem, 2010 Aug 27. PMID 20566637, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_121907.3

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    acts_upstream_of_or_within mitochondrial mRNA modification IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    mitochondrial editing factor 18
    NP_197403.2
    • mitochondrial editing factor 18 (MEF18); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G22070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      6352591..6354956 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_121907.3 → NP_197403.2  mitochondrial editing factor 18 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197403.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P0C8Q8, Q3E9D2
      UniProtKB/TrEMBL
      A0A178UD64, A0A5S9Y6A4, A0A654G2C0
      Conserved Domains (2) summary
      PLN03077
      Location:46 → 671
      PLN03077; Protein ECB2; Provisional
      sd00004
      Location:140 → 167
      PPR; PPR repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P0C8Q8.1

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