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    pfkB-like carbohydrate kinase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832035, updated on 18-Sep-2024

    Summary

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    Official Full Name
    pfkB-like carbohydrate kinase family protein
    Primary source
    TAIR:AT5G19150
    Locus tag
    AT5G19150
    See related
    Araport:AT5G19150
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T24G5.50; T24G5_50
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    12
    Sequence:
    Chromosome: 5; NC_003076.8 (6423305..6428468, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Eukaryotic aspartyl protease family protein Neighboring gene GPI transamidase component family protein / Gaa1-like family protein Neighboring gene aluminum induced protein with YGL and LRDR motifs Neighboring gene uncharacterized protein Neighboring gene TRICHOME BIREFRINGENCE-LIKE 11

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A pathway for repair of NAD(P)H in plants. Colinas M, et al. J Biol Chem, 2014 May 23. PMID 24706747, Free PMC Article
    2. Plants utilize a highly conserved system for repair of NADH and NADPH hydrates. Niehaus TD, et al. Plant Physiol, 2014 May. PMID 24599492, Free PMC Article
    3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    4. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_121920.4
    NM_203082.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ATP-dependent NAD(P)H-hydrate dehydratase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within NADH metabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within NADP metabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in mitochondrion IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pfkB-like carbohydrate kinase family protein
    NP_568369.1
    • pfkB-like carbohydrate kinase family protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family, carbohydrate kinase-related (InterPro:IPR000631); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_974811.1
    • pfkB-like carbohydrate kinase family protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family, carbohydrate kinase-related (InterPro:IPR000631); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      6423305..6428468 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_203082.1 → NP_974811.1  pfkB-like carbohydrate kinase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974811.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q94AF2
      UniProtKB/TrEMBL
      A0A178UA58, A0A5S9Y612
      Conserved Domains (1) summary
      cd01171
      Location:69 → 352
      YXKO-related; B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.

    2. NM_121920.4 → NP_568369.1  pfkB-like carbohydrate kinase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568369.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q94AF2
      UniProtKB/TrEMBL
      A0A178UA58, A0A5S9Y612
      Conserved Domains (1) summary
      cd01171
      Location:69 → 352
      YXKO-related; B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q94AF2.1

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