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    SDHAF2 succinate dehydrogenase assembly factor [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835177, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SDHAF2
    Official Full Name
    succinate dehydrogenase assembly factor
    Primary source
    TAIR:AT5G51040
    Locus tag
    AT5G51040
    See related
    Araport:AT5G51040
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    K3K7.22; K3K7_22; Succinate dehydrogenase assembly factor 2
    Summary
    Encodes succinate dehydrogenase assembly factor 2 (SDHAF2), a low abundance mitochondrial protein needed for assembly and activity of mitochondrial complex II and for normal root elongation.
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    Genomic context

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    See SDHAF2 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    5
    Sequence:
    Chromosome: 5; NC_003076.8 (20750513..20752115)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Rubredoxin-like superfamily protein Neighboring gene crumpled leaf Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein Neighboring gene Mitochondrial substrate carrier family protein Neighboring gene tRNA-Ser

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Knockdown of Succinate Dehydrogenase Assembly Factor 2 Induces Reactive Oxygen Species-Mediated Auxin Hypersensitivity Causing pH-Dependent Root Elongation. Tivendale ND, et al. Plant Cell Physiol, 2021 Oct 29. PMID 34018557
    2. Succinate dehydrogenase assembly factor 2 is needed for assembly and activity of mitochondrial complex II and for normal root elongation in Arabidopsis. Huang S, et al. Plant J, 2013 Feb. PMID 23036115
    3. Proteome-wide screens for small ubiquitin-like modifier (SUMO) substrates identify Arabidopsis proteins implicated in diverse biological processes. Elrouby N, et al. Proc Natl Acad Sci U S A, 2010 Oct 5. PMID 20855607, Free PMC Article
    4. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Knockdown of Succinate Dehydrogenase Assembly Factor 2 Induces Reactive Oxygen Species-Mediated Auxin Hypersensitivity Causing pH-Dependent Root Elongation.
      Title: Knockdown of Succinate Dehydrogenase Assembly Factor 2 Induces Reactive Oxygen Species-Mediated Auxin Hypersensitivity Causing pH-Dependent Root Elongation.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001036975.1
    NM_001203580.1
    NM_124483.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables succinate dehydrogenase (quinone) activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within primary root development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    succinate dehydrogenase assembly factor
    NP_001032052.1
    • unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF339 (InterPro:IPR005631); Has 368 Blast hits to 368 proteins in 141 species: Archae - 0; Bacteria - 216; Metazoa - 8; Fungi - 13; Plants - 40; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink).
    NP_001190509.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF339 (InterPro:IPR005631).
    NP_199917.1
    • unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF339 (InterPro:IPR005631); Has 532 Blast hits to 532 proteins in 207 species: Archae - 0; Bacteria - 285; Metazoa - 16; Fungi - 41; Plants - 40; Viruses - 0; Other Eukaryotes - 150 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      20750513..20752115
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001344916.1 → NP_001330999.1  succinate dehydrogenase assembly factor [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BCI7

    2. NM_124483.3 → NP_199917.1  succinate dehydrogenase assembly factor [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_199917.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LBK3, Q9FI44
      UniProtKB/TrEMBL
      A0A178UBJ4, A0A654G9W6
      Conserved Domains (1) summary
      pfam03937
      Location:73 → 145
      Sdh5; Flavinator of succinate dehydrogenase

    3. NM_001036975.1 → NP_001032052.1  succinate dehydrogenase assembly factor [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001032052.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2FJA0, B9DGI7
      Conserved Domains (1) summary
      pfam03937
      Location:69 → 141
      Sdh5; Flavinator of succinate dehydrogenase

    4. NM_001203580.1 → NP_001190509.1  succinate dehydrogenase assembly factor [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190509.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654G9W6, F4KBT8
      Conserved Domains (1) summary
      pfam03937
      Location:73 → 154
      Sdh5; Flavinator of succinate dehydrogenase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FI44.1

    Gene LinkOut

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