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    TMO6 TARGET OF MONOPTEROS 6 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836142, updated on 18-Sep-2024

    Summary

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    Official Symbol
    TMO6
    Official Full Name
    TARGET OF MONOPTEROS 6
    Primary source
    TAIR:AT5G60200
    Locus tag
    AT5G60200
    See related
    Araport:AT5G60200
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F15L12.10; F15L12_10; TARGET OF MONOPTEROS 6
    Summary
    Encodes a Dof-type transcription factor.
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    Genomic context

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    See TMO6 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    2
    Sequence:
    Chromosome: 5; NC_003076.8 (24240810..24242523)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene pumilio 19 Neighboring gene Cysteine proteinases superfamily protein Neighboring gene ROP interactive partner 5 Neighboring gene uncharacterized protein Neighboring gene tetraspanin4 Neighboring gene splicing endonuclease 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Expression of DOF genes identifies early stages of vascular development in Arabidopsis leaves. Gardiner J, et al. Int J Dev Biol, 2010. PMID 20563990
    2. MONOPTEROS controls embryonic root initiation by regulating a mobile transcription factor. Schlereth A, et al. Nature, 2010 Apr 8. PMID 20220754
    3. Mobile PEAR transcription factors integrate positional cues to prime cambial growth. Miyashima S, et al. Nature, 2019 Jan. PMID 30626969, Free PMC Article
    4. Transcriptional and posttranscriptional regulation of transcription factor expression in Arabidopsis roots. Lee JY, et al. Proc Natl Acad Sci U S A, 2006 Apr 11. PMID 16581911, Free PMC Article
    5. The Dof family of plant transcription factors. Yanagisawa S. Trends Plant Sci, 2002 Dec. PMID 12475498

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_125413.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within phloem or xylem histogenesis IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of DNA-templated transcription TAS
    Traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within root development IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within root radial pattern formation IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    TARGET OF MONOPTEROS 6
    NP_568920.1
    • TARGET OF MONOPTEROS 6 (TMO6); CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: Dof-type zinc finger DNA-binding family protein (TAIR:AT3G45610.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      24240810..24242523
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_125413.4 → NP_568920.1  TARGET OF MONOPTEROS 6 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568920.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WRV9, Q84TE9, Q8LDE1, Q9LSS6
      UniProtKB/TrEMBL
      A0A5S9YFQ7, A0A654GDB4
      Conserved Domains (1) summary
      pfam02701
      Location:54 → 110
      zf-Dof; Dof domain, zinc finger
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q84TE9.1

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